hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-20274360/chunk_1/iprscan-20080806-20274360.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: ah01627
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00389                                                 220.4    1.5e-61   3
SM00355                                                 101.0    1.3e-25   6
SM00451                                                  26.3     0.0043   4

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00451      1/4     172   206 ..     1    37 []     6.3      5.4
SM00355      1/6     175   199 ..     1    23 []    21.8    0.096
SM00451      2/4     229   263 ..     1    37 []     6.4      5.4
SM00355      2/6     232   256 ..     1    23 []    22.1    0.077
SM00355      3/6     464   487 ..     1    23 []    15.1      6.3
SM00389      1/3     579   641 ..     1    63 []    70.1  2.8e-16
SM00355      4/6     753   775 ..     1    23 []    23.0    0.043
SM00389      2/3     841   903 ..     1    63 []    76.5  3.2e-18
SM00389      3/3    1049  1111 ..     1    63 []    73.8  2.1e-17
SM00451      3/4    1127  1161 ..     1    37 []     2.3       17
SM00355      5/6    1130  1154 ..     1    23 []     6.2       62
SM00451      4/4    1476  1510 ..     1    37 []    11.2      1.3
SM00355      6/6    1479  1503 ..     1    23 []    12.9       11

Alignments of top-scoring domains:
SM00451: domain 1 of 4, from 172 to 206: score 6.3, E = 5.4
                   *->tggfyCklCnvtfkddeisvreaHlkGkkHkknvkky<-*
                       +++ C +C+ +f+   + + + H+++  H  + kk    
     ah01627   172    ARPYKCTVCKESFT-QKNIL-LVHYNSVSHLHKMKKA    206  

SM00355: domain 1 of 6, from 175 to 199: score 21.8, E = 0.096
                   *->ykCpigCgksfssk.aLkrHmr..vH<-*
                      ykC++ C++sf++k+ L  H+ + +H   
     ah01627   175    YKCTV-CKESFTQKnILLVHYNsvSH    199  

SM00451: domain 2 of 4, from 229 to 263: score 6.4, E = 5.4
                   *->tggfyCklCnvtfkddeisvreaHlkGkkHkknvkky<-*
                      +++f C +C+v+++  + ++ e H+++  H+ + +     
     ah01627   229    DKPFKCTVCRVSYN-QSSTL-EIHMRSVLHQTRSRGT    263  

SM00355: domain 2 of 6, from 232 to 256: score 22.1, E = 0.077
                   *->ykCpigCgksfssk.aLkrHmr..vH<-*
                      +kC++ C  s+++ + L+ Hmr+  H   
     ah01627   232    FKCTV-CRVSYNQSsTLEIHMRsvLH    256  

SM00355: domain 3 of 6, from 464 to 487: score 15.1, E = 6.3
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      + C   Cgk fs+   Lk H  +vH   
     ah01627   464    LACGA-CGKLFSNMlILKTHEEhVH    487  

SM00389: domain 1 of 3, from 579 to 641: score 70.1, E = 2.8e-16
                   *->krrkRtsftpeQleeLEkeFeknpYPsreereeLAkeLgLterqVkv
                      +r +Rt ft+ Q+++L+ +Fe + YP   e e+LA  LgL  r+V v
     ah01627   579    RRFSRTKFTEFQTQALQSFFETSAYPKDGEVERLASLLGLASRVVVV 625  

                   WFQNRRakwkrqekkk<-*
                   WFQN+R+k +++  +    
     ah01627   626 WFQNARQKARKNACEG    641  

SM00355: domain 4 of 6, from 753 to 775: score 23.0, E = 0.043
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ C  sfss++ L+ H r H   
     ah01627   753    HTCDQ-CAISFSSQdLLTSHRRLH    775  

SM00389: domain 2 of 3, from 841 to 903: score 76.5, E = 3.2e-18
                   *->krrkRtsftpeQleeLEkeFeknpYPsreereeLAkeLgLterqVkv
                       +r Rt++ peQle+L ++++++ +P+r++++ +++e gL +r+V+v
     ah01627   841    DKRLRTTILPEQLEILYRWYMQDSNPTRKMLDCISEEVGLKKRVVQV 887  

                   WFQNRRakwkrqekkk<-*
                   WFQN Ra++++ + ++   
     ah01627   888 WFQNTRARERKGQFRS    903  

SM00389: domain 3 of 3, from 1049 to 1111: score 73.8, E = 2.1e-17
                   *->krrkRtsftpeQleeLEkeFeknpYPsreereeLAkeLgLterqVkv
                      +rr+Rt  ++ Ql+++++ +e  + P+ +e e L +e+gL++r+++v
     ah01627  1049    QRRYRTQMSSLQLKIMKACYEAYRTPTMQECEVLGEEIGLPKRVIQV 1095 

                   WFQNRRakwkrqekkk<-*
                   WFQN+Rak+k+ +      
     ah01627  1096 WFQNARAKEKKAKLQG    1111 

SM00451: domain 3 of 4, from 1127 to 1161: score 2.3, E = 17
                   *->tggfyCklCnvtfkddeisvreaHlkGkkHkknvkky<-*
                       ++  C++C+v +    +s  + Hl +++H  ++k+    
     ah01627  1127    AQRTDCPYCDVKYD-FYVSC-RGHLFSRQHLAKLKEA    1161 

SM00355: domain 5 of 6, from 1130 to 1154: score 6.2, E = 62
                   *->ykCpigCgksfssk.aLkrHmr..vH<-*
                        Cp+ C+ ++  + + + H+ +++H   
     ah01627  1130    TDCPY-CDVKYDFYvSCRGHLFsrQH    1154 

SM00451: domain 4 of 4, from 1476 to 1510: score 11.2, E = 1.3
                   *->tggfyCklCnvtfkddeisvreaHlkGkkHkknvkky<-*
                      +  ++C  C+v ++ ++ ++ ++Hl++  H+++ +     
     ah01627  1476    ICTYHCLACEVLLS-GREAL-ASHLRSSAHRRKAAPP    1510 

SM00355: domain 6 of 6, from 1479 to 1503: score 12.9, E = 11
                   *->ykCpigCgksfssk.aLkrHmr..vH<-*
                      y+C   C    s ++aL  H+r++ H   
     ah01627  1479    YHCLA-CEVLLSGReALASHLRssAH    1503 

//