hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080806/iprscan-20080806-20332494/chunk_1/iprscan-20080806-20332494.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ah01686 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00041.11.fs Fibronectin type III domain 202.0 1.3e-57 4 PF00041.11.ls Fibronectin type III domain 192.3 1.1e-54 4 PF00047.15.ls Immunoglobulin domain 180.9 2.9e-51 6 PF07679.6.fs Immunoglobulin I-set domain 176.0 1e-50 5 PF07679.6.ls Immunoglobulin I-set domain 171.2 2.5e-48 5 PF00047.15.fs Immunoglobulin domain 171.0 2.8e-48 6 PF07686.7.fs Immunoglobulin V-set domain 53.8 1.1e-14 4 PF07686.7.ls Immunoglobulin V-set domain 46.7 7.2e-11 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07679.6.ls 1/5 51 143 .. 1 96 [] 8.7 0.00021 PF00047.15.fs 1/6 68 127 .. 1 65 [] 24.6 5.5e-06 PF00047.15.ls 1/6 68 127 .. 1 65 [] 26.4 9.1e-05 PF07679.6.ls 2/5 253 337 .. 1 96 [] 38.8 1.7e-08 PF07679.6.fs 2/5 265 337 .. 12 96 .] 40.7 2.8e-11 PF00047.15.ls 3/6 268 322 .. 1 65 [] 48.6 1.9e-11 PF00047.15.fs 3/6 268 322 .. 1 65 [] 46.8 4.3e-12 PF07679.6.fs 3/5 341 426 .. 1 96 [] 62.1 1.7e-17 PF07679.6.ls 3/5 341 426 .. 1 96 [] 64.0 4.6e-16 PF00047.15.fs 4/6 355 411 .. 1 65 [] 26.8 1.4e-06 PF00047.15.ls 4/6 355 411 .. 1 65 [] 28.6 2.1e-05 PF07679.6.ls 4/5 431 519 .. 1 96 [] 36.6 8.2e-08 PF07686.7.ls 3/4 432 520 .. 1 141 [] 18.1 0.00073 PF00047.15.fs 5/6 447 504 .. 1 65 [] 31.2 8.5e-08 PF00047.15.ls 5/6 447 504 .. 1 65 [] 33.0 9.7e-07 PF07679.6.fs 4/5 466 519 .. 34 96 .] 42.1 1.1e-11 PF07686.7.ls 4/4 522 619 .. 1 141 [] 18.3 0.0007 PF07679.6.ls 5/5 523 618 .. 1 96 [] 23.2 1.3e-05 PF07679.6.fs 5/5 523 618 .. 1 96 [] 21.2 1.4e-05 PF00047.15.fs 6/6 537 603 .. 1 65 [] 37.5 1.5e-09 PF00047.15.ls 6/6 537 603 .. 1 65 [] 39.5 1.1e-08 PF00041.11.fs 1/4 622 711 .. 1 84 [] 74.3 1.1e-20 PF00041.11.ls 1/4 622 711 .. 1 84 [] 76.3 8.8e-20 PF00041.11.ls 2/4 724 814 .. 1 84 [] 31.4 3e-06 PF00041.11.fs 2/4 724 814 .. 1 84 [] 29.3 8.6e-08 PF00041.11.ls 3/4 826 914 .. 1 84 [] 81.8 2e-21 PF00041.11.fs 3/4 826 914 .. 1 84 [] 79.8 2.9e-22 Alignments of top-scoring domains: PF07679.6.ls: domain 1 of 5, from 51 to 143: score 8.7, E = 0.00021 *->PkFtqkpkdv...eVqeGesarfeCkVtGtPePtVsWfKdGqplssv P+F+ +p +v +e + e + + C+++ +P+ t W+ +G +++ ah01686 51 PVFEDQPLSVlfpEESTEEQVLLACRARASPPATYRWKMNGTEMKL- 96 llpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGe.aeasae p++r++ + + +++ + D+G+Y C A+N++G+ ++ +a ah01686 97 -EPGSRHQLVGGN-----LVIMNPTKAQDAGVYQCLASNPVGTvVSREAI 140 LtV<-* L ah01686 141 LRF 143 PF00047.15.fs: domain 1 of 6, from 68 to 127: score 24.6, E = 5.5e-06 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq +e v L C++ ++p++t++W+ ng+++ + +s ++ +++ ah01686 68 EEQVLLACRA--RASPPATYRWKMNGTeMKlE--PGSRHQLVGGNL- 109 tsLtitnvtpeDggtYtCvv<-* + +++++ +D+g+Y C + ah01686 110 --VIMNPTKAQDAGVYQCLA 127 PF00047.15.ls: domain 1 of 6, from 68 to 127: score 26.4, E = 9.1e-05 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq +e v L C++ ++p++t++W+ ng+++ + +s ++ +++ ah01686 68 EEQVLLACRA--RASPPATYRWKMNGTeMKlE--PGSRHQLVGGNL- 109 tsLtitnvtpeDggtYtCvv<-* + +++++ +D+g+Y C + ah01686 110 --VIMNPTKAQDAGVYQCLA 127 PF07679.6.ls: domain 2 of 5, from 253 to 337: score 38.8, E = 1.7e-08 *->PkFtqkp.kdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvll P++ + + + +G+ +++eC + G+P P + W K + ls+ ah01686 253 PSIKARFpAETYALVGQQVTLECFAFGNPVPRIKWRKVDGSLSP--- 296 psdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV t++ tL I+ v +D+G+Y C A+Ns G++++ + +V ah01686 297 ----QWTTAEP-----TLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIV 337 <-* ah01686 - - PF07679.6.fs: domain 2 of 5, from 265 to 337: score 40.7, E = 2.8e-11 *->VqeGesarfeCkVtGtPePtVsWfKdGqplssvllpsdrfkvtydgG + +G+ +++eC + G+P P + W K + ls+ t++ ah01686 265 ALVGQQVTLECFAFGNPVPRIKWRKVDGSLSP-------QWTTAEP- 303 sgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV<-* tL I+ v +D+G+Y C A+Ns G++++ + +V ah01686 304 ----TLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIV 337 PF00047.15.ls: domain 3 of 6, from 268 to 322: score 48.6, E = 1.9e-11 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+ vtL C + fg+p +++ W++ +++l + +++ + + ah01686 268 GQQVTLECFA--FGNPVPRIKWRKVDGsLSpQWTTAEPT-------- 304 tsLtitnvtpeDggtYtCvv<-* L+i +v+ eD+gtY C++ ah01686 305 --LQIPSVSFEDEGTYECEA 322 PF00047.15.fs: domain 3 of 6, from 268 to 322: score 46.8, E = 4.3e-12 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+ vtL C + fg+p +++ W++ +++l + +++ + + ah01686 268 GQQVTLECFA--FGNPVPRIKWRKVDGsLSpQWTTAEPT-------- 304 tsLtitnvtpeDggtYtCvv<-* L+i +v+ eD+gtY C++ ah01686 305 --LQIPSVSFEDEGTYECEA 322 PF07679.6.fs: domain 3 of 5, from 341 to 426: score 62.1, E = 1.7e-17 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P+ +++++d e+ +G+ +r C + G P PtV W+++G+ l s ah01686 341 PEWLKVISDTEADIGSNLRWGCAAAGKPRPTVRWLRNGELLAS---- 383 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< r+ v + + L++s+ +DsG Y CvA+N+ G+ asaeL V ah01686 384 QNRVEVLAGD------LRFSKLSLEDSGMYQCVAENKHGTIYASAELAV 426 -* ah01686 - - PF07679.6.ls: domain 3 of 5, from 341 to 426: score 64.0, E = 4.6e-16 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P+ +++++d e+ +G+ +r C + G P PtV W+++G+ l s ah01686 341 PEWLKVISDTEADIGSNLRWGCAAAGKPRPTVRWLRNGELLAS---- 383 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< r+ v + + L++s+ +DsG Y CvA+N+ G+ asaeL V ah01686 384 QNRVEVLAGD------LRFSKLSLEDSGMYQCVAENKHGTIYASAELAV 426 -* ah01686 - - PF00047.15.fs: domain 4 of 6, from 355 to 411: score 26.8, E = 1.4e-06 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+ ++ C + g p +tv+Wlrng l + ++v + + ah01686 355 GSNLRWGCAA--AGKPRPTVRWLRNGElLAsQNRVEVLAGD------ 393 tsLtitnvtpeDggtYtCvv<-* L++++++ eD+g Y Cv+ ah01686 394 --LRFSKLSLEDSGMYQCVA 411 PF00047.15.ls: domain 4 of 6, from 355 to 411: score 28.6, E = 2.1e-05 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+ ++ C + g p +tv+Wlrng l + ++v + + ah01686 355 GSNLRWGCAA--AGKPRPTVRWLRNGElLAsQNRVEVLAGD------ 393 tsLtitnvtpeDggtYtCvv<-* L++++++ eD+g Y Cv+ ah01686 394 --LRFSKLSLEDSGMYQCVA 411 PF07679.6.ls: domain 4 of 5, from 431 to 519: score 36.6, E = 8.2e-08 *->PkFtqkp.kdve.VqeGesarfeCkVtGtPePtVsWfKdGqplssvl P F p +++ +++ G + C+ + P+ V W K+ + l + ah01686 431 PDFRLNPvRRLIpAARGGEILIPCQPRAAPKAVVLWSKGTEILVN-- 475 lpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLt s+r+ vt dg tL+I+n+ ++D+GkYtC A+N G+a ++ L ah01686 476 --SSRVTVTPDG-----TLIIRNISRSDEGKYTCFAENFMGKANSTGILS 518 V<-* V ah01686 519 V 519 PF07686.7.ls: domain 3 of 4, from 432 to 520: score 18.1, E = 0.00073 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss ++ + + r ++ +a+Gg +++pC+++ ah01686 432 DFRLNP-VRR------------LIPAARGGEILIPCQPR-------- 457 ssgtfsiyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtls + + W++ ++ ++s rvt++ ah01686 458 AAPKAVVLWSK-GTE-------------ILVNS-----------SRVTVT 482 gnpskgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl<-* ++++ L I+n+++sD+G Y+C n+ ++ + L V+ ah01686 483 PDGT-----LIIRNISRSDEGKYTCFAENF-MGKANSTGILSVR 520 PF00047.15.fs: domain 5 of 6, from 447 to 504: score 31.2, E = 8.5e-08 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+ ++C+ + p + v W ++ l ++ +vt++++++ ah01686 447 GGEILIPCQP--RAAPKAVVLWSKGTEiLVnSSRVTVTPDGT----- 486 tsLtitnvtpeDggtYtCvv<-* L i+n++++D+g YtC + ah01686 487 --LIIRNISRSDEGKYTCFA 504 PF00047.15.ls: domain 5 of 6, from 447 to 504: score 33.0, E = 9.7e-07 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+ ++C+ + p + v W ++ l ++ +vt++++++ ah01686 447 GGEILIPCQP--RAAPKAVVLWSKGTEiLVnSSRVTVTPDGT----- 486 tsLtitnvtpeDggtYtCvv<-* L i+n++++D+g YtC + ah01686 487 --LIIRNISRSDEGKYTCFA 504 PF07679.6.fs: domain 4 of 5, from 466 to 519: score 42.1, E = 1.1e-11 *->WfKdGqplssvllpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCv W K+ + l + s+r+ vt dg tL+I+n+ ++D+GkYtC ah01686 466 WSKGTEILVN----SSRVTVTPDG-----TLIIRNISRSDEGKYTCF 503 AtNsaGeaeasaeLtV<-* A+N G+a ++ L V ah01686 504 AENFMGKANSTGILSV 519 PF07686.7.ls: domain 4 of 4, from 522 to 619: score 18.3, E = 0.0007 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss + +t p+ s ++G+++tL+C+ s + ah01686 522 ATKITL-APS------------SADINLGDNLTLQCHAS------HD 549 ssgtfsiyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtls ++++ +++W ++ + +++g+ ++ r+ + ah01686 550 PTMDLTFTWTL------------------DDFPIDFDKPGGHYR-RTNVK 580 gnpskgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl<-* +++ LtI n+ql + G Y+C + ++ ++ ++ V+ ah01686 581 ETIG----DLTILNAQLRHGGKYTCMAQTV-VDSASKEATVLVR 619 PF07679.6.ls: domain 5 of 5, from 523 to 618: score 23.2, E = 1.3e-05 *->PkFtqkpkdveVqeGesarfeCkVtGtP..ePtVsWfKdGqpl...s k+t p+++ ++ G+ ++++C+++ +P+ + t +W+ d+ p++ ++ ah01686 523 TKITLAPSSADINLGDNLTLQCHASHDPtmDLTFTWTLDDFPIdfdK 569 svllpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasa + +++++ t+++ + LtI+n+q + GkYtC A+ + +a+++a ah01686 570 P----GGHYRRTNVK-ETIGDLTILNAQLRHGGKYTCMAQTVVDSASKEA 614 eLtV<-* ++ V ah01686 615 TVLV 618 PF07679.6.fs: domain 5 of 5, from 523 to 618: score 21.2, E = 1.4e-05 *->PkFtqkpkdveVqeGesarfeCkVtGtP..ePtVsWfKdGqpl...s k+t p+++ ++ G+ ++++C+++ +P+ + t +W+ d+ p++ ++ ah01686 523 TKITLAPSSADINLGDNLTLQCHASHDPtmDLTFTWTLDDFPIdfdK 569 svllpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasa + +++++ t+++ + LtI+n+q + GkYtC A+ + +a+++a ah01686 570 P----GGHYRRTNVK-ETIGDLTILNAQLRHGGKYTCMAQTVVDSASKEA 614 eLtV<-* ++ V ah01686 615 TVLV 618 PF00047.15.fs: domain 6 of 6, from 537 to 603: score 37.5, E = 1.5e-09 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvt.ssenngdsty G+ +tL+C++s+ + d t+tW+ ++ ++ + ++++ ++n++ t ah01686 537 GDNLTLQCHASHDPTMDLTFTWTLDDFpIDfDKPGGhYRRTNVKETI 583 qtsLtitnvtpeDggtYtCvv<-* ++ Lti+n++ +gg YtC++ ah01686 584 GD-LTILNAQLRHGGKYTCMA 603 PF00047.15.ls: domain 6 of 6, from 537 to 603: score 39.5, E = 1.1e-08 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvt.ssenngdsty G+ +tL+C++s+ + d t+tW+ ++ ++ + ++++ ++n++ t ah01686 537 GDNLTLQCHASHDPTMDLTFTWTLDDFpIDfDKPGGhYRRTNVKETI 583 qtsLtitnvtpeDggtYtCvv<-* ++ Lti+n++ +gg YtC++ ah01686 584 GD-LTILNAQLRHGGKYTCMA 603 PF00041.11.fs: domain 1 of 4, from 622 to 711: score 74.3, E = 1.1e-20 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpkngge. P++P+++ v+d+++t+++lsWs+ +++++pi +Y+++ R p g ++ ah01686 622 PGPPGGVVVRDIGDTTIQLSWSRGFdNHSPIAKYTLQARTPPAGKWk 668 ...wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* + +++ ++ g++ ++++ gL+P ++Y++rV+A n G+G++S ah01686 669 qvrTNPANIEGNAETAQVLGLTPWMDYEFRVIASNILGtGEPS 711 PF00041.11.ls: domain 1 of 4, from 622 to 711: score 76.3, E = 8.8e-20 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpkngge. P++P+++ v+d+++t+++lsWs+ +++++pi +Y+++ R p g ++ ah01686 622 PGPPGGVVVRDIGDTTIQLSWSRGFdNHSPIAKYTLQARTPPAGKWk 668 ...wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* + +++ ++ g++ ++++ gL+P ++Y++rV+A n G+G++S ah01686 669 qvrTNPANIEGNAETAQVLGLTPWMDYEFRVIASNILGtGEPS 711 PF00041.11.ls: domain 2 of 4, from 724 to 814: score 31.4, E = 3e-06 *->P.saPtnltvtdvtstsltlsWspPt...gngpitgYevtyRqpkng P+ aP++l+ + + +l ++W+p +++ ng+ gY + R +++ ah01686 724 PsVAPSGLSGGGGAPGELIVNWTPMSreyQNGDGFGYLLSFR-RQGS 769 gewkeltvpgt..tt.sytltgLkPgteYtvrVqAvnggG.GpeS<-* +w++ +vpg + ++ y + +P+t+ +v+++++n+ G+GpeS ah01686 770 THWQTARVPGAdaQYfVYSNESVRPYTPFEVKIRSYNRRGdGPES 814 PF00041.11.fs: domain 2 of 4, from 724 to 814: score 29.3, E = 8.6e-08 *->P.saPtnltvtdvtstsltlsWspPt...gngpitgYevtyRqpkng P+ aP++l+ + + +l ++W+p +++ ng+ gY + R +++ ah01686 724 PsVAPSGLSGGGGAPGELIVNWTPMSreyQNGDGFGYLLSFR-RQGS 769 gewkeltvpgt..tt.sytltgLkPgteYtvrVqAvnggG.GpeS<-* +w++ +vpg + ++ y + +P+t+ +v+++++n+ G+GpeS ah01686 770 THWQTARVPGAdaQYfVYSNESVRPYTPFEVKIRSYNRRGdGPES 814 PF00041.11.ls: domain 3 of 4, from 826 to 914: score 81.8, E = 2e-21 *->P.saPtnltvtdvtstsltlsWspPt..gngpitgYevtyRqpkngg P+ aPt + +++v+s+++ ++W+p ++ ng + gYe++y +++++ ah01686 826 PrVAPTKVWAKGVSSSEMNVTWEPVQqdMNGILLGYEIRY-WKAGDK 871 e...wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* e ++ +t +t s+ ++gL P+t+Y+v+V+A+n++G+Gp S ah01686 872 EaaaDRVRTAGLDT-SARVSGLHPNTKYHVTVRAYNRAGtGPAS 914 PF00041.11.fs: domain 3 of 4, from 826 to 914: score 79.8, E = 2.9e-22 *->P.saPtnltvtdvtstsltlsWspPt..gngpitgYevtyRqpkngg P+ aPt + +++v+s+++ ++W+p ++ ng + gYe++y +++++ ah01686 826 PrVAPTKVWAKGVSSSEMNVTWEPVQqdMNGILLGYEIRY-WKAGDK 871 e...wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* e ++ +t +t s+ ++gL P+t+Y+v+V+A+n++G+Gp S ah01686 872 EaaaDRVRTAGLDT-SARVSGLHPNTKYHVTVRAYNRAGtGPAS 914 //