hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080806/iprscan-20080806-20332494/chunk_1/iprscan-20080806-20332494.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ah01686 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00408 262.7 2.9e-74 5 SM00409 235.5 4.4e-66 6 SM00060 136.6 2.6e-36 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00409 1/6 57 144 .. 1 58 [] 13.5 5.7 SM00408 1/5 66 132 .. 1 56 [] 40.3 2.6e-07 SM00409 2/6 154 244 .. 1 58 [] 19.3 0.54 SM00409 3/6 260 338 .. 1 58 [] 60.9 1.6e-13 SM00408 2/5 266 327 .. 1 56 [] 86.7 2.9e-21 SM00409 4/6 347 427 .. 1 58 [] 47.8 1.4e-09 SM00408 3/5 353 416 .. 1 56 [] 59.0 6.2e-13 SM00409 5/6 439 520 .. 1 58 [] 39.1 5.8e-07 SM00408 4/5 445 509 .. 1 56 [] 43.5 2.9e-08 SM00409 6/6 529 619 .. 1 58 [] 54.8 1.1e-11 SM00408 5/5 535 608 .. 1 56 [] 33.3 3.4e-05 SM00060 1/4 622 708 .. 1 69 [] 56.6 3.2e-12 SM00060 2/4 725 811 .. 1 69 [] 22.8 0.047 SM00060 3/4 827 911 .. 1 69 [] 55.5 7e-12 SM00060 4/4 927 1007 .. 1 69 [] 1.7 1.3e+02 Alignments of top-scoring domains: SM00409: domain 1 of 6, from 57 to 144: score 13.5, E = 5.7 *->pp.vtvke...GesvtLtC.as.....titWy............... p +v+ e+++ e v L C+a +++ t++W+ +++ + ++++++ ah01686 57 PLsVLFPEestEEQVLLACrARasppaTYRWKmngtemklepgsrhq 103 ......LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* +++ ++++ +++D+ G+Y+C a+++ g++ s ++ L+ ah01686 104 lvggnlVIMnPTKAQDA---GVYQCLASnpVGTVVS-REAILRFG 144 SM00408: domain 1 of 5, from 66 to 132: score 40.3, E = 2.6e-07 *->leGqsVtLtCpasgdpvpnItWlk.gkplp..........sgstLti ++V L C+a+++p ++ +W+ +g+++ +++++++ +g+ + ah01686 66 STEEQVLLACRARASPPATYRWKMnGTEMKlepgsrhqlvGGNLVIM 112 knvsleDsGlYtCvArNsvg<-* + + D+G+Y+C+A+N+vg ah01686 113 NPTKAQDAGVYQCLASNPVG 132 SM00409: domain 2 of 6, from 154 to 244: score 19.3, E = 0.54 *->pp.vtvkeGesvtLtC.as......titWy................. +v eG v L+C+ + + ++ +++W+ + ++ ++++++ + ah01686 154 RDpVKTHEGWGVMLPCnPPahypglSYRWLlnefpnfiptdgrhfvs 200 .....LtI.nvtpeDsesgGtYtCaat......sgsasseqgttLtVl<- +++++L I + ++D G+Y C at++ + + +s++s ++++L ah01686 201 qttgnLYIaRTNASDL---GNYSCLATshmdfsTKSVFS-KFAQLNLA 244 * ah01686 - - SM00409: domain 3 of 6, from 260 to 338: score 60.9, E = 1.6e-13 *->pp.vtvkeGesvtLtC.as.....titWy................Lt p ++++ +G+ vtL+C a +++ ++i+W++ +++ +++ ++ ++L+ ah01686 260 PAeTYALVGQQVTLECfAFgnpvpRIKWRkvdgslspqwttaeptLQ 306 I.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* I++v++eD+ GtY C+a++++g ++ +++V+ ah01686 307 IpSVSFEDE---GTYECEAEnsKGRDTV--QGRIIVQ 338 SM00408: domain 2 of 5, from 266 to 327: score 86.7, E = 2.9e-21 *->leGqsVtLtCpasgdpvpnItWlk.gkplp.....sgstLtiknvsl l Gq+VtL+C+a g+pvp I+W+k + +l+++ ++ + tL+i +vs+ ah01686 266 LVGQQVTLECFAFGNPVPRIKWRKvDGSLSpqwttAEPTLQIPSVSF 312 eDsGlYtCvArNsvg<-* eD+G+Y+C+A+Ns+g ah01686 313 EDEGTYECEAENSKG 327 SM00409: domain 4 of 6, from 347 to 427: score 47.8, E = 1.4e-09 *->pp.vtvkeGesvtLtC.as.....titWy.................. +++++ G++++ C a++++ +t++W++++ ++++ ++ ah01686 347 ISdTEADIGSNLRWGCaAAgkprpTVRWLrngellasqnrvevlagd 393 LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* L+++++++eDs G Y+C+a++++g++++ +++L V+ ah01686 394 LRFsKLSLEDS---GMYQCVAEnkHGTIYA--SAELAVQ 427 SM00408: domain 3 of 5, from 353 to 416: score 59.0, E = 6.2e-13 *->leGqsVtLtCpasgdpvpnItWlk.gkplp.......sgstLtiknv +G ++++ C a+g+p p+++Wl++g+ l+++++ + + L+++ ah01686 353 DIGSNLRWGCAAAGKPRPTVRWLRnGELLAsqnrvevLAGDLRFSKL 399 sleDsGlYtCvArNsvg<-* sleDsG+Y+CvA+N++g ah01686 400 SLEDSGMYQCVAENKHG 416 SM00409: domain 5 of 6, from 439 to 520: score 39.1, E = 5.8e-07 *->pp.vtvkeGesvtLtC.as.....titWy.................. + + + +G+ + ++C+ ++ + W++++ ++++ + ++++ ah01686 439 RRlIPAARGGEILIPCqPRaapkaVVLWSkgteilvnssrvtvtpdg 485 .LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* +L+I+n++++D+ G YtC a++ g+a s + L+V+ ah01686 486 tLIIrNISRSDE---GKYTCFAEnfMGKANS--TGILSVR 520 SM00408: domain 4 of 5, from 445 to 509: score 43.5, E = 2.9e-08 *->leGqsVtLtCpasgdpvpnItWlk..gkplp.......sgstLtikn G+ + ++C +++p + + W k+++ +++++ + + ++tL i+n ah01686 445 ARGGEILIPCQPRAAPKAVVLWSKgtEILVNssrvtvtPDGTLIIRN 491 vsleDsGlYtCvArNsvg<-* +s++D+G+YtC+A+N +g ah01686 492 ISRSDEGKYTCFAENFMG 509 SM00409: domain 6 of 6, from 529 to 619: score 54.8, E = 1.1e-11 *->pp.vtvkeGesvtLtC.as.......titWy................ p++ ++G+++tL+C+as++++ + t+tW+ ++ + + ++++++ + ah01686 529 PSsADINLGDNLTLQChAShdptmdlTFTWTlddfpidfdkpgghyr 575 ..........LtI.nvtpeDsesgGtYtCaat.sgsasseqgttLtVl<- +++ + + ++LtI n+++ + G YtC+a++ + s +++t+ V+ ah01686 576 rtnvketigdLTIlNAQLRHG---GKYTCMAQtVVDSAS-KEATVLVR 619 * ah01686 - - SM00408: domain 5 of 5, from 535 to 608: score 33.3, E = 3.4e-05 *->leGqsVtLtCpasgdpvp..nItWlk.gkplp............... + G+++tL+C+as dp+ + ++tW+ ++ p++ ++++++ ++++ ++ ah01686 535 NLGDNLTLQCHASHDPTMdlTFTWTLdDFPIDfdkpgghyrrtnvke 581 sgstLtiknvsleDsGlYtCvArNsvg<-* + + Lti n++l + G+YtC A+ v ah01686 582 TIGDLTILNAQLRHGGKYTCMAQTVVD 608 SM00060: domain 1 of 4, from 622 to 708: score 56.6, E = 3.2e-12 *->PgpPsnptelrvtdvtststsdltsvtlsWepP......ivgYr... PgpP++ ++v+d+++t +++lsW++ +++++i Y+ + ah01686 622 PGPPGG---VVVRDIGDT------TIQLSWSRGfdnhspIAKYTlqa 659 ........................ytltgLkPgaepwteYefrVrAvngn ++++ ++++++++++ + +++ +++ + gL+P+ YefrV+A n ah01686 660 rtppagkwkqvrtnpaniegnaetAQVLGLTPW----MDYEFRVIASNI- 704 daGeg<-* G g ah01686 705 -LGTG 708 SM00060: domain 2 of 4, from 725 to 811: score 22.8, E = 0.047 *->PgpPsnptelrvtdvtststsdltsvtlsWepP............iv +Ps+ l+ + + + W+p + ++ ++++ ++ + ah01686 725 SVAPSG---LSGGGGAPG------ELIVNWTPMsreyqngdgfgyLL 762 gYr.....................ytltgLkPgaepwteYefrVrAvngn ++r+++++ +++ ++++ + + +y + +P+ t e+++r +n+ ah01686 763 SFRrqgsthwqtarvpgadaqyfvYSNESVRPY----TPFEVKIRSYNR- 807 daGeg<-* +G g ah01686 808 -RGDG 811 SM00060: domain 3 of 4, from 827 to 911: score 55.5, E = 7e-12 *->PgpPsnptelrvtdvtststsdltsvtlsWepP...........ivg +P+ + ++ v+s+ ++++Wep + ++ +++++ ah01686 827 RVAPTK---VWAKGVSSS------EMNVTWEPVqqdmngillgyEIR 864 Yr....................ytltgLkPgaepwteYefrVrAvngnda Y++ ++++ +++++ + +++++++gL+P+ t+Y+++VrA+n+ a ah01686 865 YWkagdkeaaadrvrtagldtsARVSGLHPN----TKYHVTVRAYNR--A 908 Geg<-* G g ah01686 909 GTG 911 SM00060: domain 4 of 4, from 927 to 1007: score 1.7, E = 1.3e+02 *->PgpPsnptelrvtdvtststsdltsvtlsWepP........ivgYr. pP+n +++t +s+ s++++W+p + +++ ++gY+ ah01686 927 RRPPGN---ISWT-FSSS------SLSIKWDPVvpfrnesaVTGYKm 963 ...................ytltgLkPgaepwteYefrVrAvngndaGeg +++ +++ +++++ ++ +++ +++r + +G g ah01686 964 lyqndlhltptlhltgknwIEIP-VPEDI---GHALVQIRTT--GPGGDG 1007 <-* ah01686 - - //