hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080806/iprscan-20080806-20385516/chunk_1/iprscan-20080806-20385516.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ah01845 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 232.6 7.8e-67 9 PF00096.16.fs Zinc finger, C2H2 type 214.9 1.7e-61 9 PF00651.21.fs BTB/POZ domain 95.2 4.7e-26 1 PF00651.21.ls BTB/POZ domain 96.9 5.5e-26 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00651.21.ls 1/1 2 111 .. 1 135 [] 96.9 5.5e-26 PF00651.21.fs 1/1 2 111 .. 1 135 [] 95.2 4.7e-26 PF00096.16.fs 1/9 434 457 .. 1 24 [] 25.7 3.8e-05 PF00096.16.ls 1/9 434 457 .. 1 24 [] 27.6 4e-05 PF00096.16.ls 3/9 488 511 .. 1 24 [] 20.6 0.0052 PF00096.16.ls 4/9 518 540 .. 1 24 [] 25.2 0.00021 PF00096.16.fs 4/9 518 540 .. 1 24 [] 23.2 0.00015 PF00096.16.ls 5/9 546 568 .. 1 24 [] 29.0 1.5e-05 PF00096.16.fs 5/9 546 568 .. 1 24 [] 27.0 1.7e-05 PF00096.16.fs 6/9 574 596 .. 1 24 [] 24.6 7.2e-05 PF00096.16.ls 6/9 574 596 .. 1 24 [] 26.5 8.6e-05 PF00096.16.ls 7/9 602 624 .. 1 24 [] 25.8 0.00015 PF00096.16.fs 7/9 602 624 .. 1 24 [] 23.8 0.00011 PF00096.16.ls 8/9 630 652 .. 1 24 [] 37.1 5.8e-08 PF00096.16.fs 8/9 630 652 .. 1 24 [] 35.1 1.7e-07 PF00096.16.ls 9/9 658 680 .. 1 24 [] 24.4 0.00038 Alignments of top-scoring domains: PF00651.21.ls: domain 1 of 1, from 2 to 111: score 96.9, E = 5.5e-26 *->lnelrkqg.elcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFka lne+r+ ++lcDV Lv f+AHK vLaa+S +F++ ah01845 2 LNEQRLFQpDLCDVDLVLVPQ------RSVFPAHKGVLAAYSQFFHS 42 lFtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqk lFt + ++ + e+ le p ++++L+fiYt++l ++ ah01845 43 LFTQN-------KQLQRV-ELSLEALAPGGLQQILNFIYTSKLLVN---- 80 sPssckseenvedlLaaAadllqipslvdaCeefliksl<-* +nv+++L+aA +llq+ ++ C e l+ + ah01845 81 -------AANVHEVLSAA-SLLQMADIAASCQELLDARS 111 PF00651.21.fs: domain 1 of 1, from 2 to 111: score 95.2, E = 4.7e-26 *->lnelrkqg.elcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFka lne+r+ ++lcDV Lv f+AHK vLaa+S +F++ ah01845 2 LNEQRLFQpDLCDVDLVLVPQ------RSVFPAHKGVLAAYSQFFHS 42 lFtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqk lFt + ++ + e+ le p ++++L+fiYt++l ++ ah01845 43 LFTQN-------KQLQRV-ELSLEALAPGGLQQILNFIYTSKLLVN---- 80 sPssckseenvedlLaaAadllqipslvdaCeefliksl<-* +nv+++L+aA +llq+ ++ C e l+ + ah01845 81 -------AANVHEVLSAA-SLLQMADIAASCQELLDARS 111 PF00096.16.fs: domain 1 of 9, from 434 to 457: score 25.7, E = 3.8e-05 *->ykCpfdCgksFsrksnLkrHlrt.H<-* + C+ +C ++F+++ L++H++++H ah01845 434 HPCQ-KCPRVFNNRWYLEKHMNVtH 457 PF00096.16.ls: domain 1 of 9, from 434 to 457: score 27.6, E = 4e-05 *->ykCpfdCgksFsrksnLkrHlrt.H<-* + C+ +C ++F+++ L++H++++H ah01845 434 HPCQ-KCPRVFNNRWYLEKHMNVtH 457 PF00096.16.ls: domain 3 of 9, from 488 to 511: score 20.6, E = 0.0052 *->ykCpfdCgksFsrksnLkrHlrt.H<-* +C Cgk+F+ +L+ H ++ H ah01845 488 IQCV-TCGKAFKKLWSLHEHNKIvH 511 PF00096.16.ls: domain 4 of 9, from 518 to 540: score 25.2, E = 0.00021 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +C k+F + ++ ++H+ H ah01845 518 FSCE-ICEKKFYTMAHVRKHMVAH 540 PF00096.16.fs: domain 4 of 9, from 518 to 540: score 23.2, E = 0.00015 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +C k+F + ++ ++H+ H ah01845 518 FSCE-ICEKKFYTMAHVRKHMVAH 540 PF00096.16.ls: domain 5 of 9, from 546 to 568: score 29.0, E = 1.5e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ CgksF+r+ +Lk H H ah01845 546 FTCE-TCGKSFKRSMSLKVHSLQH 568 PF00096.16.fs: domain 5 of 9, from 546 to 568: score 27.0, E = 1.7e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ CgksF+r+ +Lk H H ah01845 546 FTCE-TCGKSFKRSMSLKVHSLQH 568 PF00096.16.fs: domain 6 of 9, from 574 to 596: score 24.6, E = 7.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ C+++F k++L++H+ +H ah01845 574 FRCE-NCNERFQYKYQLRSHMSIH 596 PF00096.16.ls: domain 6 of 9, from 574 to 596: score 26.5, E = 8.6e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ C+++F k++L++H+ +H ah01845 574 FRCE-NCNERFQYKYQLRSHMSIH 596 PF00096.16.ls: domain 7 of 9, from 602 to 624: score 25.8, E = 0.00015 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ Cgk F+ k + H++tH ah01845 602 FMCQ-WCGKDFNMKQYFDEHMKTH 624 PF00096.16.fs: domain 7 of 9, from 602 to 624: score 23.8, E = 0.00011 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ Cgk F+ k + H++tH ah01845 602 FMCQ-WCGKDFNMKQYFDEHMKTH 624 PF00096.16.ls: domain 8 of 9, from 630 to 652: score 37.1, E = 5.8e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +CgksF+++ n+krH+rtH ah01845 630 YICE-ICGKSFTSRPNMKRHRRTH 652 PF00096.16.fs: domain 8 of 9, from 630 to 652: score 35.1, E = 1.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +CgksF+++ n+krH+rtH ah01845 630 YICE-ICGKSFTSRPNMKRHRRTH 652 PF00096.16.ls: domain 9 of 9, from 658 to 680: score 24.4, E = 0.00038 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cg++F+ + Lk+H+ ++ ah01845 658 YPCD-VCGQRFRFSNMLKAHKEKC 680 //