hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-20385516/chunk_1/iprscan-20080806-20385516.nocrc
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Query sequence: ah01845
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 197.0    1.7e-54   9
SM00225                                                  76.6      3e-18   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00225      1/1      15   111 ..     1   114 []    76.6    3e-18
SM00355      1/9     434   457 ..     1    23 []    27.8   0.0015
SM00355      2/9     461   481 ..     1    23 []     4.7       93
SM00355      3/9     488   511 ..     1    23 []    19.3     0.54
SM00355      4/9     518   540 ..     1    23 []    23.7    0.026
SM00355      5/9     546   568 ..     1    23 []    25.4   0.0081
SM00355      6/9     574   596 ..     1    23 []    26.3   0.0041
SM00355      7/9     602   624 ..     1    23 []    27.2   0.0022
SM00355      8/9     630   652 ..     1    23 []    35.4  7.7e-06
SM00355      9/9     658   685 ..     1    23 []     7.2       49

Alignments of top-scoring domains:
SM00225: domain 1 of 1, from 15 to 111: score 76.6, E = 3e-18
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      +D++lv +            f+a  Hk vLaa+   S +F++lf+ +
     ah01845    15    VDLVLVPQR---------SVFPA--HKGVLAAY---SQFFHSLFTQn 47   

                   .......ieldDeallievspeaFralLnflYt.kldlpeedvenveelL
                   ++ ++ +  l+         p  ++ +Lnf+Yt+kl ++     nv e+L
     ah01845    48 kqlqrveLSLEA------LAPGGLQQILNFIYTsKLLVNAA---NVHEVL 88   

                   elAdfldSYGqip.lvelCeefllknl<-*
                    +A++l    q+ +++  C+e l+ ++   
     ah01845    89 SAASLL----QMAdIAASCQELLDARS    111  

SM00355: domain 1 of 9, from 434 to 457: score 27.8, E = 0.0015
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      + C++ C+++f+++  L++Hm  +H   
     ah01845   434    HPCQK-CPRVFNNRwYLEKHMNvTH    457  

SM00355: domain 2 of 9, from 461 to 481: score 4.7, E = 93
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                        C++ Cgk+f  +++L  H +     
     ah01845   461    QICDQ-CGKRFLLEsELLLHRQ--    481  

SM00355: domain 3 of 9, from 488 to 511: score 19.3, E = 0.54
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                       +C   Cgk f+   +L +H + vH   
     ah01845   488    IQCVT-CGKAFKKLwSLHEHNKiVH    511  

SM00355: domain 4 of 9, from 518 to 540: score 23.7, E = 0.026
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C+i C k+f +  + ++Hm  H   
     ah01845   518    FSCEI-CEKKFYTMaHVRKHMVAH    540  

SM00355: domain 5 of 9, from 546 to 568: score 25.4, E = 0.0081
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C+  Cgksf++  +Lk H  +H   
     ah01845   546    FTCET-CGKSFKRSmSLKVHSLQH    568  

SM00355: domain 6 of 9, from 574 to 596: score 26.3, E = 0.0041
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C+  C+++f  k +L+ Hm +H   
     ah01845   574    FRCEN-CNERFQYKyQLRSHMSIH    596  

SM00355: domain 7 of 9, from 602 to 624: score 27.2, E = 0.0022
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C++ Cgk f+ k+ + +Hm++H   
     ah01845   602    FMCQW-CGKDFNMKqYFDEHMKTH    624  

SM00355: domain 8 of 9, from 630 to 652: score 35.4, E = 7.7e-06
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C+i Cgksf+s++++krH r+H   
     ah01845   630    YICEI-CGKSFTSRpNMKRHRRTH    652  

SM00355: domain 9 of 9, from 658 to 685: score 7.2, E = 49
                   *->ykCpigCgksfssk.aLkrHmr.....vH<-*
                      y C++ Cg++f+  + Lk H  +  + +H   
     ah01845   658    YPCDV-CGQRFRFSnMLKAHKEkcfrvSH    685  

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