hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090617/iprscan-20090617-19273885/chunk_1/iprscan-20090617-19273885.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: ah01915
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00046.19.ls Homeobox domain                                 90.4    5.2e-24   1
PF00046.19.fs Homeobox domain                                 88.4    2.1e-23   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00046.19.fs   1/1     127   183 ..     1    57 []    88.4  2.1e-23
PF00046.19.ls   1/1     127   183 ..     1    57 []    90.4  5.2e-24

Alignments of top-scoring domains:
PF00046.19.fs: domain 1 of 1, from 127 to 183: score 88.4, E = 2.1e-23
                   *->rrkRTtftpeQleeLEkeFqknrYPsreeReeLAkkLgLterqVkvW
                      r +RT ft  Q+eeLE +F+ ++YP++++R+eLA+ Lg te+ V+vW
     ah01915   127    RTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVW 173  

                   FQNRRaKwKk<-*
                   F N+Ra++++   
     ah01915   174 FKNKRARCRR    183  

PF00046.19.ls: domain 1 of 1, from 127 to 183: score 90.4, E = 5.2e-24
                   *->rrkRTtftpeQleeLEkeFqknrYPsreeReeLAkkLgLterqVkvW
                      r +RT ft  Q+eeLE +F+ ++YP++++R+eLA+ Lg te+ V+vW
     ah01915   127    RTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVW 173  

                   FQNRRaKwKk<-*
                   F N+Ra++++   
     ah01915   174 FKNKRARCRR    183  

//