hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-20444987/chunk_1/iprscan-20080806-20444987.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: ah01984
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00292.9.fs 'Paired box' domain                            186.8    4.9e-53   1
PF00292.9.ls 'Paired box' domain                            143.8    4.3e-40   1
PF00046.19.ls Homeobox domain                                113.8    4.7e-31   1
PF00046.19.fs Homeobox domain                                111.8    1.9e-30   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00292.9.ls   1/1       3    91 ..     1   125 []   143.8  4.3e-40
PF00292.9.fs   1/1       9    91 ..    43   125 .]   186.8  4.9e-53
PF00046.19.fs   1/1     174   230 ..     1    57 []   111.8  1.9e-30
PF00046.19.ls   1/1     174   230 ..     1    57 []   113.8  4.7e-31

Alignments of top-scoring domains:
PF00292.9.ls: domain 1 of 1, from 3 to 91: score 143.8, E = 4.3e-40
                   *->gqgrvnqLGGvFvnGRPLPnaiRqkivElAhsGvRPCdisRqLrvsh
                                 F+   P                         ++vs+
     ah01984     3    -----------FLSTSP-------------------------MQVSN 13   

                   GCvsKiLaRyqEtGsirPgviGGsKPkvatPevvkkieeykrenPgiFaW
                   GCvsKiL+Ry+EtGsirP++iGGsKP+vatPevv+ki++ykre+P+iFaW
     ah01984    14 GCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAW 63   

                   EiRdkLlkegvcdkdnvPsvssisRilR<-*
                   EiRd+Ll+egvc++dn+Psvssi+R+lR   
     ah01984    64 EIRDRLLSEGVCTNDNIPSVSSINRVLR    91   

PF00292.9.fs: domain 1 of 1, from 9 to 91: score 186.8, E = 4.9e-53
                   *->LrvshGCvsKiLaRyqEtGsirPgviGGsKPkvatPevvkkieeykr
                      ++vs+GCvsKiL+Ry+EtGsirP++iGGsKP+vatPevv+ki++ykr
     ah01984     9    MQVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKR 55   

                   enPgiFaWEiRdkLlkegvcdkdnvPsvssisRilR<-*
                   e+P+iFaWEiRd+Ll+egvc++dn+Psvssi+R+lR   
     ah01984    56 ECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRVLR    91   

PF00046.19.fs: domain 1 of 1, from 174 to 230: score 111.8, E = 1.9e-30
                   *->rrkRTtftpeQleeLEkeFqknrYPsreeReeLAkkLgLterqVkvW
                       r+RT+ft+eQ+e+LEkeF++++YP++++Re+LA+k++L+e++++vW
     ah01984   174    QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVW 220  

                   FQNRRaKwKk<-*
                   F NRRaKw++   
     ah01984   221 FSNRRAKWRR    230  

PF00046.19.ls: domain 1 of 1, from 174 to 230: score 113.8, E = 4.7e-31
                   *->rrkRTtftpeQleeLEkeFqknrYPsreeReeLAkkLgLterqVkvW
                       r+RT+ft+eQ+e+LEkeF++++YP++++Re+LA+k++L+e++++vW
     ah01984   174    QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVW 220  

                   FQNRRaKwKk<-*
                   F NRRaKw++   
     ah01984   221 FSNRRAKWRR    230  

//