hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-20444987/chunk_1/iprscan-20080806-20444987.nocrc
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Query sequence: ah01984
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00351                                                 149.5    3.4e-40   1
SM00389                                                 102.0    6.9e-26   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00351    1/1       4    91 ..     1   125 []   149.5  3.4e-40
SM00389    1/1     173   235 ..     1    63 []   102.0  6.9e-26

Alignments of top-scoring domains:
SM00351: domain 1 of 1, from 4 to 91: score 149.5, E = 3.4e-40
                   *->gqggvNQLGGvFvNGRPLPdeiRqrIVeLaqkGvRpCdISRqLkVSH
                                       L+++                      +VS+
     ah01984     4    -----------------LSTS--------------------PMQVSN 13   

                   GCVSKILgRYyeTGSirPgaIGGSKpkvatpkVvkkIadykqenpgiFaW
                   GCVSKILgRYyeTGSirP+aIGGSKp+vatp+Vv+kIa+yk+e+p+iFaW
     ah01984    14 GCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAW 63   

                   EIRdrLlsdgvCdkdnvPSvSSInRilr<-*
                   EIRdrLls+gvC++dn+PSvSSInR+lr   
     ah01984    64 EIRDRLLSEGVCTNDNIPSVSSINRVLR    91   

SM00389: domain 1 of 1, from 173 to 235: score 102.0, E = 6.9e-26
                   *->krrkRtsftpeQleeLEkeFeknpYPsreereeLAkeLgLterqVkv
                       +r+Rtsft+eQ+e+LEkeFe+++YP++  re+LA+++ L+e++++v
     ah01984   173    LQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQV 219  

                   WFQNRRakwkrqekkk<-*
                   WF+NRRakw+r+ek +   
     ah01984   220 WFSNRRAKWRREEKLR    235  

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