hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-20551714/chunk_1/iprscan-20080806-20551714.nocrc
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Query sequence: ah02678
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF05010.4.ls Transforming acidic coiled-coil-containing p   456.3   3.6e-134   1
PF05010.4.fs Transforming acidic coiled-coil-containing p   454.4   1.3e-133   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF05010.4.fs   1/1     601   808 ..     1   220 []   454.4 1.3e-133
PF05010.4.ls   1/1     601   808 ..     1   220 []   456.3 3.6e-134

Alignments of top-scoring domains:
PF05010.4.fs: domain 1 of 1, from 601 to 808: score 454.4, E = 1.3e-133
                   *->lkysqkDlDavekkikvevtreEvieKelevlElkeKyEelrkevlE
                      +++s++D++av     ++++reE+i+Ke+e++E+k+KyEe+r+evlE
     ah02678   601    ICLSESDKTAV-----LTLIREEIITKEIEANEWKKKYEETRQEVLE 642  

                   mgKtnaklnGivaeyEktiaqlieeeqrqkelserelQkvlkEkdqalaD
                   m+K       ivaeyEktiaq+ie+eqr++++s++++Q++++Ek+qalaD
     ah02678   643 MRK-------IVAEYEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQALAD 685  

                   LnSlEkSfSDLFkRyEKqKEvleGyrkNEEsLkkcvedyLarikkeEQRY
                   LnS+E+S+SDLF+RyE+ K+vleG++kNEE+Lkkc++dyLar+k+eEQRY
     ah02678   686 LNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRY 735  

                   qaLKiHAeeKLdrANeeIAqvrskAqaEaaaLqAsLRKEqmkvqSLertL
                   qaLKiHAeeKLd+ANeeIAqvr+kA+aE+aaL+A+LRKEqmkv+SLer+L
     ah02678   736 QALKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVESLERAL 785  

                   eQKskEneELtKICDeLIaKmgK<-*
                   +QK++E+eELtKICDeLIaK+gK   
     ah02678   786 QQKNQEIEELTKICDELIAKLGK    808  

PF05010.4.ls: domain 1 of 1, from 601 to 808: score 456.3, E = 3.6e-134
                   *->lkysqkDlDavekkikvevtreEvieKelevlElkeKyEelrkevlE
                      +++s++D++av     ++++reE+i+Ke+e++E+k+KyEe+r+evlE
     ah02678   601    ICLSESDKTAV-----LTLIREEIITKEIEANEWKKKYEETRQEVLE 642  

                   mgKtnaklnGivaeyEktiaqlieeeqrqkelserelQkvlkEkdqalaD
                   m+K       ivaeyEktiaq+ie+eqr++++s++++Q++++Ek+qalaD
     ah02678   643 MRK-------IVAEYEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQALAD 685  

                   LnSlEkSfSDLFkRyEKqKEvleGyrkNEEsLkkcvedyLarikkeEQRY
                   LnS+E+S+SDLF+RyE+ K+vleG++kNEE+Lkkc++dyLar+k+eEQRY
     ah02678   686 LNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRY 735  

                   qaLKiHAeeKLdrANeeIAqvrskAqaEaaaLqAsLRKEqmkvqSLertL
                   qaLKiHAeeKLd+ANeeIAqvr+kA+aE+aaL+A+LRKEqmkv+SLer+L
     ah02678   736 QALKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVESLERAL 785  

                   eQKskEneELtKICDeLIaKmgK<-*
                   +QK++E+eELtKICDeLIaK+gK   
     ah02678   786 QQKNQEIEELTKICDELIAKLGK    808  

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