hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-21010624/chunk_1/iprscan-20080806-21010624.nocrc
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Query sequence: ah02705
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PF01062.11.fs Bestrophin                                   252.8    6.6e-73   1
PF01062.11.ls Bestrophin                                    88.1    1.6e-23   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PF01062.11.ls   1/1      76   374 ..     1   407 []    88.1  1.6e-23
PF01062.11.fs   1/1     102   310 ..    96   309 ..   252.8  6.6e-73

Alignments of top-scoring domains:
PF01062.11.ls: domain 1 of 1, from 76 to 374: score 88.1, E = 1.6e-23
                   *->MTisYnldVstsspwtFfkLllRFWKGSIWKaVwkELfvWlflYyii
                                           ++                        
     ah02705    76    ---------------------RH------------------------ 77   

                   RFAPHsvIYRdnyaLskkqWDqyqeiFerlvryfdsrlnytIPLtFMLGF
                            R   aL++  W q        + +  + +          GF
     ah02705    78 ---------R--RALGPGLWPQP-----GPSPLAPRPSCP--------GF 103  

                   FVttVvnRWwkiFdniGwIDnvAlsvaayirGkdEeaRliRRnIiRYlvL
                   +Vt+Vv+RWw +++n++w+D  +++v+ ++ GkdE+ Rl RR+ iRY +L
     ah02705   104 YVTLVVTRWWNQYENLPWPDRLMSLVSGFVEGKDEQGRLLRRTLIRYANL 153  

                   sQiLvFRDiSmkVRKRFPTldtlVaAGlMteeEldkldeiqspyyGdkYw
                     +L+ R +S+ V KRFP+  +lV AG+Mt+ E + l+++  p++    w
     ah02705   154 GNVLILRSVSTAVYKRFPSAQHLVQAGFMTPAEHKQLEKLSLPHN--MFW 201  

                   lPInWafsLlQyearkeGlIesdylfnvlikeIkeFRtglalLcnYDWVP
                   +P  W  +L   +a   G+I +++l   l +e+++ Rt    L+ YDW+ 
     ah02705   202 VPWVWFANLS-MKAWLGGRIRDPILLQSLLNEMNTLRTQCGHLYAYDWIS 250  

                   IPLvYPQVVfLAVRsYFfvCLfgRQfldlddkdmptevkIDlyFPimTsl
                   IPLvY+QVV  AV+s F+ CL+gRQfl+   ++ p    +Dl++P++T+l
     ah02705   251 IPLVYTQVVTVAVYSFFLTCLVGRQFLNPAKAY-PGH-ELDLVVPVFTFL 298  

                   QFIFyvGWMKVAEvLLNPlGEDDDDFEcNyiIDRNLavGlmIVDslWvk.
                   QF FyvGW+KV+                       L ++l     +W ++
     ah02705   299 QFFFYVGWLKVG-----------------------LSRALL----GWRHg 321  

                   .............EnqydrtPdlek.DvFWdadvePlYsssetFaeiprn
                   +++++++ ++++   q  +  ++e + + W  +v+P+++++e+       
     ah02705   322 qrghgqqlpetrmQCQERKVSRVESsQAWWRTPVIPATREAEA------- 364  

                   plvGSaaWnveleedDvkeimmvPh<-*
                      +S+        +       +++   
     ah02705   365 --GESLE-------P------GRRR    374  

PF01062.11.fs: domain 1 of 1, from 102 to 310: score 252.8, E = 6.6e-73
                   *->GFFVttVvnRWwkiFdniGwIDnvAlsvaayirGkdEeaRliRRnIi
                      GF+Vt+Vv+RWw +++n++w+D  +++v+ ++ GkdE+ Rl RR+ i
     ah02705   102    GFYVTLVVTRWWNQYENLPWPDRLMSLVSGFVEGKDEQGRLLRRTLI 148  

                   RYlvLsQiLvFRDiSmkVRKRFPTldtlVaAGlMteeEldkldeiqspyy
                   RY +L  +L+ R +S+ V KRFP+  +lV AG+Mt+ E + l+++  p++
     ah02705   149 RYANLGNVLILRSVSTAVYKRFPSAQHLVQAGFMTPAEHKQLEKLSLPHN 198  

                   GdkYwlPInWafsLlQyearkeGlIesdylfnvlikeIkeFRtglalLcn
                       w+P  W  +L   +a   G+I +++l   l +e+++ Rt    L+ 
     ah02705   199 --MFWVPWVWFANLS-MKAWLGGRIRDPILLQSLLNEMNTLRTQCGHLYA 245  

                   YDWVPIPLvYPQVVfLAVRsYFfvCLfgRQfldlddkdmptevkIDlyFP
                   YDW+ IPLvY+QVV  AV+s F+ CL+gRQfl+   ++ p    +Dl++P
     ah02705   246 YDWISIPLVYTQVVTVAVYSFFLTCLVGRQFLNPAKAY-PGH-ELDLVVP 293  

                   imTslQFIFyvGWMKVA<-*
                   ++T+lQF FyvGW+KV+   
     ah02705   294 VFTFLQFFFYVGWLKVG    310  

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