hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080806/iprscan-20080806-21070069/chunk_1/iprscan-20080806-21070069.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ah02859 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00005.17.ls ABC transporter 337.3 2.5e-98 2 PF00005.17.fs ABC transporter 333.7 2.9e-97 2 PF00664.13.ls ABC transporter transmembrane region 133.7 4.8e-37 2 PF00664.13.fs ABC transporter transmembrane region 129.7 7.3e-36 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00664.13.fs 1/2 172 440 .. 1 286 [] 37.8 8.4e-10 PF00664.13.ls 1/2 172 440 .. 1 286 [] 39.7 9.1e-09 PF00005.17.fs 1/2 581 752 .. 1 224 [] 159.9 5.9e-45 PF00005.17.ls 1/2 581 752 .. 1 224 [] 161.7 1.7e-45 PF00664.13.fs 2/2 853 1140 .. 1 286 [] 91.9 1.7e-24 PF00664.13.ls 2/2 853 1140 .. 1 286 [] 93.9 4.4e-25 PF00005.17.fs 2/2 1213 1396 .. 1 224 [] 173.7 4.1e-49 PF00005.17.ls 2/2 1213 1396 .. 1 224 [] 175.6 1.2e-49 Alignments of top-scoring domains: PF00664.13.fs: domain 1 of 2, from 172 to 440: score 37.8, E = 8.4e-10 *->lligilllilagatalvtfplllgrfldsgfplsdgnddhearssli l+++i++l++ ++++ + +++ +++l++ + ++ + + ah02859 172 LILSIVCLMITQLAGFSGPAFMVKHLLEY---TQAT--E--SNLQYS 211 slailsllavfvlqglllqgsfyllAgerlgqrlrkrlfrallrqilglf l++l +l+++ ++ +++++ ++ r+g rlr ++ + +++il+l ah02859 212 LLLVL-GLLLTEIVRSWSLALTWA-LNYRTGVRLRGAILTMAFKKILKLK 259 dsffdtnsvGeltsRltnDvskirdglgdklgllfqslatvvgglivmfy + ++s Gel + +nD +++ ++ + +l ++++ ++g++ + ah02859 260 NI--KEKSLGELINICSNDGQRMFEAAAVGSLLAGGPVVAILGMIYNVII 307 yswkLtLvllailpllillsavlakklrklnrkeqkayakagsvaeEsls +++ +L+ ++ l++++ ++ ++ + ++rk a++++ + ++E+l+ ah02859 308 LGPTGFLGSA-VFILFYPAMMFASRLTAYFRRKCVAATDERVQKMNEVLT 356 girTVkafgrEeyelerydkaledaekagikkaiiagllfgitqlisyls i+ +k +++ +++ + +k++e ++ + ag++++it ++++ ah02859 357 YIKFIKMYAWVKAFSQSVQKIRE----EERRILEKAGYFQSITVGVAPI- 401 yalalwfGgylvasvisgglsvgtlfaflslgnqltgpl<-* +++++ + ++ v+ ++ +l+ + f++++++n++t++l ah02859 402 VVVIASVVTFSVHMTLGFDLTAAQAFTVVTVFNSMTFAL 440 PF00664.13.ls: domain 1 of 2, from 172 to 440: score 39.7, E = 9.1e-09 *->lligilllilagatalvtfplllgrfldsgfplsdgnddhearssli l+++i++l++ ++++ + +++ +++l++ + ++ + + ah02859 172 LILSIVCLMITQLAGFSGPAFMVKHLLEY---TQAT--E--SNLQYS 211 slailsllavfvlqglllqgsfyllAgerlgqrlrkrlfrallrqilglf l++l +l+++ ++ +++++ ++ r+g rlr ++ + +++il+l ah02859 212 LLLVL-GLLLTEIVRSWSLALTWA-LNYRTGVRLRGAILTMAFKKILKLK 259 dsffdtnsvGeltsRltnDvskirdglgdklgllfqslatvvgglivmfy + ++s Gel + +nD +++ ++ + +l ++++ ++g++ + ah02859 260 NI--KEKSLGELINICSNDGQRMFEAAAVGSLLAGGPVVAILGMIYNVII 307 yswkLtLvllailpllillsavlakklrklnrkeqkayakagsvaeEsls +++ +L+ ++ l++++ ++ ++ + ++rk a++++ + ++E+l+ ah02859 308 LGPTGFLGSA-VFILFYPAMMFASRLTAYFRRKCVAATDERVQKMNEVLT 356 girTVkafgrEeyelerydkaledaekagikkaiiagllfgitqlisyls i+ +k +++ +++ + +k++e ++ + ag++++it ++++ ah02859 357 YIKFIKMYAWVKAFSQSVQKIRE----EERRILEKAGYFQSITVGVAPI- 401 yalalwfGgylvasvisgglsvgtlfaflslgnqltgpl<-* +++++ + ++ v+ ++ +l+ + f++++++n++t++l ah02859 402 VVVIASVVTFSVHMTLGFDLTAAQAFTVVTVFNSMTFAL 440 PF00005.17.fs: domain 1 of 2, from 581 to 752: score 159.9, E = 5.9e-45 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->GevlalvGpNGaGKSTLLkllsGllsyPtrAeGeilldgepkelgrd G++++++G+ G+GK++L+ +++G+ + eG+i + g+ ah02859 581 GKLVGICGSVGSGKTSLISAILGQMT-LL--EGSIAISGT------- 617 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ltdlssrererlrkrigyvfQdpnlfldprlTvrenlayglpdkkaggke +yv Q+++++ + T+r+n+++g ++ ah02859 618 ---------------FAYVAQQAWIL---NATLRDNILFGKEY------- 642 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx reallrllgleeeadaraeeaLervGlpdladrsnLpqgydtvlgerpgt +++r +L+ + l +++ Lp+ + t+ ger+++ ah02859 643 -------------DEERYNSVLNSCCLRPDLAI--LPSSDLTEIGERGAN 677 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxx LSGGqkQRvaiARalltkpklLlLDEPTagLDpasraqlle.llrelrge LSGGq+QR+++ARal+ + +++LD P ++LD++ +++++++r++ + ah02859 678 LSGGQRQRISLARALYSDRSIYILDDPLSALDAHVGNHIFNsAIRKHLK- 726 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxx qgitvllitHdldlldrladrilvlenG<-* +tvl++tH+l+ l + +d ++ +++G ah02859 727 -SKTVLFVTHQLQYLVD-CDEVIFMKEG 752 PF00005.17.ls: domain 1 of 2, from 581 to 752: score 161.7, E = 1.7e-45 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->GevlalvGpNGaGKSTLLkllsGllsyPtrAeGeilldgepkelgrd G++++++G+ G+GK++L+ +++G+ + eG+i + g+ ah02859 581 GKLVGICGSVGSGKTSLISAILGQMT-LL--EGSIAISGT------- 617 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ltdlssrererlrkrigyvfQdpnlfldprlTvrenlayglpdkkaggke +yv Q+++++ + T+r+n+++g ++ ah02859 618 ---------------FAYVAQQAWIL---NATLRDNILFGKEY------- 642 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx reallrllgleeeadaraeeaLervGlpdladrsnLpqgydtvlgerpgt +++r +L+ + l +++ Lp+ + t+ ger+++ ah02859 643 -------------DEERYNSVLNSCCLRPDLAI--LPSSDLTEIGERGAN 677 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxx LSGGqkQRvaiARalltkpklLlLDEPTagLDpasraqlle.llrelrge LSGGq+QR+++ARal+ + +++LD P ++LD++ +++++++r++ + ah02859 678 LSGGQRQRISLARALYSDRSIYILDDPLSALDAHVGNHIFNsAIRKHLK- 726 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxx qgitvllitHdldlldrladrilvlenG<-* +tvl++tH+l+ l + +d ++ +++G ah02859 727 -SKTVLFVTHQLQYLVD-CDEVIFMKEG 752 PF00664.13.fs: domain 2 of 2, from 853 to 1140: score 91.9, E = 1.7e-24 *->lligilllilagatalvt..fplllgrfldsgfplsdgnddh...ea l+i l+ + +g ta+ t ++++++ + +++ gn ++ ++++ ah02859 853 LVIMALFMLNVGSTAFSTwwLSYWIKQGSGN-TTVTRGNETSvsdSM 898 rsslislailsllavfvlqglllqgsfyllAgerlgqrlrkrlfrallrq +++ ++ ++++ + l++ +++++++ + r+++rl+ l+r ah02859 899 KDNPHMQYYA-SIYALSMAVMLILKAIRGVVFVKGTLRASSRLHDELFRR 947 ilglfdsffdtnsvGeltsRltnDvskirdglgdklgllfqslatvvggl il+ ++ ffdt+++G++++R+++D++ ++ l+++ +++q++++v+ ++ ah02859 948 ILRSPMKFFDTTPTGRILNRFSKDMDEVDVRLPFQAEMFIQNVILVFFCV 997 ivmfyyswkLtLvllailpllillsavlakklrklnrkeqkayakagsva +++ + +++++++ +++ l+ +l v +r+l+r+ + ++ s++ ah02859 998 GMIAGVFPWFLVAVGPLVILFSVLHIVSRVLIRELKRLDNITQSPFLSHI 1047 eEslsgirTVkafgrEeyelerydkaledaekagikkaiiagllfgitql + s+ g+ T++a++ + +l+ry++ l+d++ + ++++l +++l ah02859 1048 TSSIQGLATIHAYNKGQEFLHRYQELLDDNQAPFFLFTCAMRWLAVRLDL 1097 isylsyalalwfGgylvasvisgglsvgtlfaflslgnqltgpl<-* is ++++ +++ + ++ i + ++ + ++++l++ +++++ ah02859 1098 ISIALITTTGLMIVLM-HGQIPPAYAGLAISYAVQLTGLFQFTV 1140 PF00664.13.ls: domain 2 of 2, from 853 to 1140: score 93.9, E = 4.4e-25 *->lligilllilagatalvt..fplllgrfldsgfplsdgnddh...ea l+i l+ + +g ta+ t ++++++ + +++ gn ++ ++++ ah02859 853 LVIMALFMLNVGSTAFSTwwLSYWIKQGSGN-TTVTRGNETSvsdSM 898 rsslislailsllavfvlqglllqgsfyllAgerlgqrlrkrlfrallrq +++ ++ ++++ + l++ +++++++ + r+++rl+ l+r ah02859 899 KDNPHMQYYA-SIYALSMAVMLILKAIRGVVFVKGTLRASSRLHDELFRR 947 ilglfdsffdtnsvGeltsRltnDvskirdglgdklgllfqslatvvggl il+ ++ ffdt+++G++++R+++D++ ++ l+++ +++q++++v+ ++ ah02859 948 ILRSPMKFFDTTPTGRILNRFSKDMDEVDVRLPFQAEMFIQNVILVFFCV 997 ivmfyyswkLtLvllailpllillsavlakklrklnrkeqkayakagsva +++ + +++++++ +++ l+ +l v +r+l+r+ + ++ s++ ah02859 998 GMIAGVFPWFLVAVGPLVILFSVLHIVSRVLIRELKRLDNITQSPFLSHI 1047 eEslsgirTVkafgrEeyelerydkaledaekagikkaiiagllfgitql + s+ g+ T++a++ + +l+ry++ l+d++ + ++++l +++l ah02859 1048 TSSIQGLATIHAYNKGQEFLHRYQELLDDNQAPFFLFTCAMRWLAVRLDL 1097 isylsyalalwfGgylvasvisgglsvgtlfaflslgnqltgpl<-* is ++++ +++ + ++ i + ++ + ++++l++ +++++ ah02859 1098 ISIALITTTGLMIVLM-HGQIPPAYAGLAISYAVQLTGLFQFTV 1140 PF00005.17.fs: domain 2 of 2, from 1213 to 1396: score 173.7, E = 4.1e-49 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->GevlalvGpNGaGKSTLLkllsGllsyPtrAeGeilldgepkelgrd e++++vG+ G+GKS+L ++l +l + + G i++d ah02859 1213 KEKIGIVGRTGSGKSSLGMALFRLVE-LS--GGCIKID--------- 1247 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ltdlssrererlrkrigyvfQdpnlfldprlTvrenlayglpdkkaggke + ++s++ +++lr +++ ++Q+p lf ++Tvr nl+ + ++ ah02859 1248 GVRISDIGLADLRSKLSIIPQEPVLF---SGTVRSNLDPFNQY------- 1287 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx reallrllgleeeadaraeeaLervGlpdladrsnLpqgydtvlgerpgt +++++++aLer ++++ + + Lp +++ ++ e++++ ah02859 1288 -------------TEDQIWDALERTHMKECIAQ--LPLKLESEVMENGDN 1322 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx LSGGqkQRvaiARalltkpklLlLDEPTagLDpasraqllellrelrgeq +S G++Q ++iARall++ k+L+LDE+Ta+ D ++ ++e++re ah02859 1323 FSVGERQLLCIARALLRHCKILILDEATAAMDTETDLLIQETIREAFA-- 1370 RF xxxxxxxxxxxxxxxxxxxxxxxxxxx gitvllitHdldlldrladrilvlenG<-* +t+l i H+l ++ +dri+vl++G ah02859 1371 DCTMLTIAHRLHTVLG-SDRIMVLAQG 1396 PF00005.17.ls: domain 2 of 2, from 1213 to 1396: score 175.6, E = 1.2e-49 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->GevlalvGpNGaGKSTLLkllsGllsyPtrAeGeilldgepkelgrd e++++vG+ G+GKS+L ++l +l + + G i++d ah02859 1213 KEKIGIVGRTGSGKSSLGMALFRLVE-LS--GGCIKID--------- 1247 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ltdlssrererlrkrigyvfQdpnlfldprlTvrenlayglpdkkaggke + ++s++ +++lr +++ ++Q+p lf ++Tvr nl+ + ++ ah02859 1248 GVRISDIGLADLRSKLSIIPQEPVLF---SGTVRSNLDPFNQY------- 1287 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx reallrllgleeeadaraeeaLervGlpdladrsnLpqgydtvlgerpgt +++++++aLer ++++ + + Lp +++ ++ e++++ ah02859 1288 -------------TEDQIWDALERTHMKECIAQ--LPLKLESEVMENGDN 1322 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx LSGGqkQRvaiARalltkpklLlLDEPTagLDpasraqllellrelrgeq +S G++Q ++iARall++ k+L+LDE+Ta+ D ++ ++e++re ah02859 1323 FSVGERQLLCIARALLRHCKILILDEATAAMDTETDLLIQETIREAFA-- 1370 RF xxxxxxxxxxxxxxxxxxxxxxxxxxx gitvllitHdldlldrladrilvlenG<-* +t+l i H+l ++ +dri+vl++G ah02859 1371 DCTMLTIAHRLHTVLG-SDRIMVLAQG 1396 //