hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-21125964/chunk_1/iprscan-20080806-21125964.nocrc
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Query sequence: ah02979
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00219                                                 510.1     1e-148   1
SM00808                                                 247.4    1.1e-69   1
SM00220                                                 216.1      3e-60   1
SM00252                                                 121.2    1.2e-31   1
SM00326                                                  68.0    1.2e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00326    1/1     101   157 ..     1    58 []    68.0  1.2e-15
SM00252    1/1     162   245 ..     1    87 []   121.2  1.2e-31
SM00219    1/1     279   530 ..     1   280 []   510.1   1e-148
SM00220    1/1     279   534 ..     1   231 []   216.1    3e-60
SM00808    1/1    1041  1167 .]     1   153 []   247.4  1.1e-69

Alignments of top-scoring domains:
SM00326: domain 1 of 1, from 101 to 157: score 68.0, E = 1.2e-15
                   *->eyvvAlYDyeaqnedELsFkkGDiitvleks.ddgWweGelnrtGke
                        +vAlYD+ a++++ Ls++kG++++vl  +++++W+e++ +  + +
     ah02979   101    NLFVALYDFVASGDNTLSITKGEKLRVLGYNhNGEWCEAQTK--NGQ 145  

                   GlfPsnYVeeie<-*
                   G++PsnY+++++   
     ah02979   146 GWVPSNYITPVN    157  

SM00252: domain 1 of 1, from 162 to 245: score 121.2, E = 1.2e-31
                   *->epWYHGkisReeAEklLkneggpdGtFLvRdSesspgdyvLSvrvkg
                      + WYHG++sR  AE lL +  g +G+FLvR+Sesspg+ ++S+r++g
     ah02979   162    HSWYHGPVSRNAAEYLLSS--GINGSFLVRESESSPGQRSISLRYEG 206  

                   kvkHyrIrrtddgkfylggtprrkFpsL.eLvehYqknslg<-*
                   +v+HyrI++  dgk y+    + +F++L eLv+h+++ ++g   
     ah02979   207 RVYHYRINTASDGKLYVSS--ESRFNTLaELVHHHSTVADG    245  

SM00219: domain 1 of 1, from 279 to 530: score 510.1, E = 1e-148
                   *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda..keeFlrEak
                      +t+++kLG G++GeVy+G++k+ +++VAVKtLked+ ++eeFl+Ea 
     ah02979   279    ITMKHKLGGGQYGEVYEGVWKkysLTVAVKTLKEDTmeVEEFLKEAA 325  

                   iMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldyLrk
                   +Mk++  kHpN+V+LlGvct e       +P +i++E+m +G+LldyLr+
     ah02979   326 VMKEI--KHPNLVQLLGVCTRE-------PPFYIITEFMTYGNLLDYLRE 366  

                   nrpk.lslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenkvvKI
                   + +++++   Ll++A+QI++ MeYLe+knf+HRDLAARNcLvgen+ vK+
     ah02979   367 CNRQeVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKV 416  

                   sDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslkdgkFt
                   +DFGLsR  + d        +Y++    g+k  +Pi+W+APEsl ++kF+
     ah02979   417 ADFGLSRLMTGD--------TYTAHA--GAK--FPIKWTAPESLAYNKFS 454  

                   skSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyRlpkPe
                   +kSDVW+FGVlLWEi t+G++PYpg     ++ ++v+e+l+k yR+++Pe
     ah02979   455 IKSDVWAFGVLLWEIATYGMSPYPG-----IDLSQVYELLEKDYRMERPE 499  

                   ndlpiSsvtCPdelYdlMlqCWaedPedRPtFselverl<-*
                            CP+++Y+lM+ CW+ +P+dRP+F+e+++ +   
     ah02979   500 G--------CPEKVYELMRACWQWNPSDRPSFAEIHQAF    530  

SM00220: domain 1 of 1, from 279 to 534: score 216.1, E = 3e-60
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik......erilrEik
                       ++  klG G +G+Vy +++kk    vA+K +k+++ + e +l+E +
     ah02979   279    ITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKedtmevEEFLKEAA 325  

                   iLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgrrglr
                   ++k+ +HPN+V+L++v+  +  +y+++E++    G+L+d+l++++r+   
     ah02979   326 VMKEiKHPNLVQLLGVCTRePPFYIITEFMTY--GNLLDYLRECNRQE-- 371  

                   kvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvKlaDF
                      +  +  +++ Qi sa+eYL ++++iHRDL   N L+ +++ vK+aDF
     ah02979   372 --VNAvVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGEnhLVKVADF 419  

                   GlArql........ttfvGTpeYmAPEvl...gYgkpavDiWSlGcilyE
                   Gl+r++++++ + +        + APE l  ++++  ++D+W++G++l+E
     ah02979   420 GLSRLMtgdtytahAGAKFPIKWTAPESLaynKFSI-KSDVWAFGVLLWE 468  

                   llt.GkpPFp..qldlifkkig...........SpeakdLikklLvkdPe
                    +t G  P+p+ +l ++++++ ++++ +++++ ++ + +L++ +++++P+
     ah02979   469 IATyGMSPYPgiDLSQVYELLEkdyrmerpegcPEKVYELMRACWQWNPS 518  

                   kRlta.eaLedeldikaHPff<-*
                   +R++  e+ ++         f   
     ah02979   519 DRPSFaEIHQAF-----ETMF    534  

SM00808: domain 1 of 1, from 1041 to 1167: score 247.4, E = 1.1e-69
                   *->pliktkvalRktrtkLtiYAtPiAkLtqaaeripsekisKdmiLElt
                      pli+t+v+lRktr              q++eri+s++i+K+++L++t
     ah02979  1041    PLISTRVSLRKTR--------------QPPERIASGAITKGVVLDST 1073 

                   elLesalkNLFNLAssseepasasqwlqLsDkghqLhstCsgYadqGipq
                   e+L++a++      ++se++as+s++l   ++g++L+++C++Y+d+ i+q
     ah02979  1074 EALCLAIS------RNSEQMASHSAVL---EAGKNLYTFCVSYVDS-IQQ 1113 

                   prsKFqFRElvsrLElqlReLrvssaSAGsrnspgntrllsellssvkeI
                   +r+KF+FRE++++LE++lReL++++a+AGs  +p++t+++s+llssvkeI
     ah02979  1114 MRNKFAFREAINKLENNLRELQICPATAGS--GPAATQDFSKLLSSVKEI 1161 

                   sdvVqR<-*
                   sd+VqR   
     ah02979  1162 SDIVQR    1167 

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