hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090525/iprscan-20090525-11152482/chunk_1/iprscan-20090525-11152482.nocrc
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Query sequence: ah03087s1
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00554.13.ls Rel homology domain (RHD)                      182.2    1.1e-51   1
PF00554.13.fs Rel homology domain (RHD)                      180.5    3.8e-51   1
PF01833.14.fs IPT/TIG domain                                  62.7    1.8e-17   1
PF01833.14.ls IPT/TIG domain                                  64.5    3.1e-16   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00554.13.fs   1/1     410   570 ..     1   199 []   180.5  3.8e-51
PF00554.13.ls   1/1     410   570 ..     1   199 []   182.2  1.1e-51
PF01833.14.fs   1/1     578   675 ..     1   104 []    62.7  1.8e-17
PF01833.14.ls   1/1     578   675 ..     1   104 []    64.5  3.1e-16

Alignments of top-scoring domains:
PF00554.13.fs: domain 1 of 1, from 410 to 570: score 180.5, E = 3.8e-51
                   *->LeIvEQPkQRGmRFRYkCEMGRSaGSIpGmesStrskKTfPtVqicn
                      L+I +QPk + +R++Y++E  +S+G++++       ++++P Vq+++
   ah03087s1   410    LRIEVQPKPH-HRAHYETE--GSRGAVKA------PTGGHPVVQLHG 447  

                   YdG.pavtirVsLVTkdeP.hrPHpFYQvHsLVGKessd.CkdGkvDvtd
                   Y ++++  ++++++T+de+ ++PH+FYQvH+++GK++++++ ++ v +t+
   ah03087s1   448 YMEnKPLGLQIFIGTADERiLKPHAFYQVHRITGKTVTTtSYEKIVGNTK 497  

                   vcevevgPetdmvasFqNLGIqcVkKKdveealkeRikkqlvremnrrel
                   v e+++ P+++m+a++++ GI++ ++ d+e ++               e+
   ah03087s1   498 VLEIPLEPKNNMRATIDCAGILKLRNADIELRKG--------------ET 533  

                   nidpfneveqealrqikdmDLnvVRLCFqaflepdstGnftlplpPVvSn
                   +i ++n               ++VRL+F++++ p+s+G+++   ++  Sn
   ah03087s1   534 DIGRKN---------------TRVRLVFRVHI-PESSGRIV--SLQTASN 565  

                   PIyDk<-*
                   PI+++   
   ah03087s1   566 PIECS    570  

PF00554.13.ls: domain 1 of 1, from 410 to 570: score 182.2, E = 1.1e-51
                   *->LeIvEQPkQRGmRFRYkCEMGRSaGSIpGmesStrskKTfPtVqicn
                      L+I +QPk + +R++Y++E  +S+G++++       ++++P Vq+++
   ah03087s1   410    LRIEVQPKPH-HRAHYETE--GSRGAVKA------PTGGHPVVQLHG 447  

                   YdG.pavtirVsLVTkdeP.hrPHpFYQvHsLVGKessd.CkdGkvDvtd
                   Y ++++  ++++++T+de+ ++PH+FYQvH+++GK++++++ ++ v +t+
   ah03087s1   448 YMEnKPLGLQIFIGTADERiLKPHAFYQVHRITGKTVTTtSYEKIVGNTK 497  

                   vcevevgPetdmvasFqNLGIqcVkKKdveealkeRikkqlvremnrrel
                   v e+++ P+++m+a++++ GI++ ++ d+e ++               e+
   ah03087s1   498 VLEIPLEPKNNMRATIDCAGILKLRNADIELRKG--------------ET 533  

                   nidpfneveqealrqikdmDLnvVRLCFqaflepdstGnftlplpPVvSn
                   +i ++n               ++VRL+F++++ p+s+G+++   ++  Sn
   ah03087s1   534 DIGRKN---------------TRVRLVFRVHI-PESSGRIV--SLQTASN 565  

                   PIyDk<-*
                   PI+++   
   ah03087s1   566 PIECS    570  

PF01833.14.fs: domain 1 of 1, from 578 to 675: score 62.7, E = 1.8e-17
                   *->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt
                      P +++    s+ ++GG ++++tG+n++s s              kV+
   ah03087s1   578    PMVERQDTDSCLVYGGQQMILTGQNFTSES--------------KVV 610  

                   fggtpv........pCdvisssss.tqivCktPpva.ggpsppvvtvsvd
                   f ++++++++  + +++v+ + s+++++ +++P++++ +++ p v+v ++
   ah03087s1   611 FTEKTTdgqqiwemEATVDKDKSQpNMLFVEIPEYRnKHIRTP-VKVNFY 659  

                   gggsgdgrssspvtFtY<-*
                   + + g++++s+p++FtY   
   ah03087s1   660 VIN-GKRKRSQPQHFTY    675  

PF01833.14.ls: domain 1 of 1, from 578 to 675: score 64.5, E = 3.1e-16
                   *->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt
                      P +++    s+ ++GG ++++tG+n++s s              kV+
   ah03087s1   578    PMVERQDTDSCLVYGGQQMILTGQNFTSES--------------KVV 610  

                   fggtpv........pCdvisssss.tqivCktPpva.ggpsppvvtvsvd
                   f ++++++++  + +++v+ + s+++++ +++P++++ +++ p v+v ++
   ah03087s1   611 FTEKTTdgqqiwemEATVDKDKSQpNMLFVEIPEYRnKHIRTP-VKVNFY 659  

                   gggsgdgrssspvtFtY<-*
                   + + g++++s+p++FtY   
   ah03087s1   660 VIN-GKRKRSQPQHFTY    675  

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