hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090525/iprscan-20090525-11152482/chunk_1/iprscan-20090525-11152482.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: ah03087s1
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00429                                                  77.9    1.2e-18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00429    1/1     577   676 ..     1   111 []    77.9  1.2e-18

Alignments of top-scoring domains:
SM00429: domain 1 of 1, from 577 to 676: score 77.9, E = 1.2e-18
                   *->dPvItrisPssGplsGGteritlcGknLdsdgsvvfvrvgvgGr.vW
                      +P ++r +  s+ + GG   + l+G+n+ s  +vvf + + +G+++W
   ah03087s1   577    LPMVERQDTDSCLVYGGQ-QMILTGQNFTSESKVVFTEKTTDGQqIW 622  

                   evpCtflpsdvhGkdsstaivCrtPpylnqspgpgsvpvrvtgevgfdng
                   e+++t++ ++++    ++++ +++P+y+n   + +  pv+v  +++++ng
   ah03087s1   623 EMEATVDKDKSQ----PNMLFVEIPEYRN---KHIRTPVKV--NFYVING 663  

                   gvrtelsppspFtYv<-*
                   ++ +  s+p++FtY+   
   ah03087s1   664 KRKR--SQPQHFTYH    676  

//