# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Oah03145.fasta.nr -Q ah03145.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ah03145, 154 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6823072 sequences Expectation_n fit: rho(ln(x))= 5.2943+/-0.000187; mu= 7.1153+/- 0.011 mean_var=78.9493+/-15.138, 0's: 34 Z-trim: 40 B-trim: 39 in 1/66 Lambda= 0.144344 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|62088498|dbj|BAD92696.1| chitinase 3-like 1 var ( 154) 1107 238.9 2e-61 gi|193787855|dbj|BAG53058.1| unnamed protein produ ( 151) 859 187.2 7e-46 gi|29726259|pdb|1HJV|A Chain A, Crystal Structure ( 362) 292 69.4 4.8e-10 gi|114571894|ref|XP_001153571.1| PREDICTED: chitin ( 364) 292 69.4 4.8e-10 gi|84028186|sp|P36222|CH3L1_HUMAN Chitinase-3-like ( 383) 292 69.4 5e-10 gi|109018794|ref|XP_001103739.1| PREDICTED: simila ( 383) 292 69.4 5e-10 gi|23512215|gb|AAH38354.1| Chitinase 3-like 1 (car ( 383) 292 69.4 5e-10 gi|114571890|ref|XP_514111.2| PREDICTED: chitinase ( 383) 292 69.4 5e-10 gi|30585313|gb|AAP36929.1| Homo sapiens chitinase ( 384) 292 69.4 5e-10 gi|114571892|ref|XP_001153636.1| PREDICTED: chitin ( 389) 292 69.5 5.1e-10 gi|75055082|sp|Q5RBP6.1|CH3L1_PONAB Chitinase-3-li ( 410) 292 69.5 5.3e-10 gi|348912|gb|AAA16074.1| glycoprotein gi|21213 ( 383) 286 68.2 1.2e-09 gi|114571896|ref|XP_001153932.1| PREDICTED: simila ( 322) 284 67.7 1.4e-09 gi|4558458|gb|AAD22610.1| glycoprotein-39 precurso ( 352) 269 64.6 1.3e-08 gi|134035334|gb|ABO47694.1| chitinase 3-like 1 pro ( 362) 269 64.6 1.3e-08 gi|60552166|gb|AAH91365.1| Chitinase 3-like 1 [Rat ( 370) 268 64.4 1.6e-08 gi|81175165|sp|Q9WTV1|CH3L1_RAT Chitinase-3-like p ( 381) 268 64.4 1.6e-08 gi|149058582|gb|EDM09739.1| chitinase 3-like 1, is ( 391) 268 64.5 1.6e-08 gi|149743864|ref|XP_001496550.1| PREDICTED: chitin ( 383) 266 64.0 2.1e-08 gi|73960205|ref|XP_547343.2| PREDICTED: similar to ( 373) 260 62.8 5e-08 gi|634098|emb|CAA87764.1| 38 kDa heparin-binding g ( 383) 253 61.3 1.4e-07 gi|57015313|sp|Q61362|CH3L1_MOUSE Chitinase-3-like ( 381) 251 60.9 1.8e-07 gi|74206884|dbj|BAE33251.1| unnamed protein produc ( 389) 251 60.9 1.9e-07 gi|26341984|dbj|BAC34654.1| unnamed protein produc ( 389) 251 60.9 1.9e-07 gi|1085066|emb|CAA63603.1| BRP39 protein [Mus musc ( 381) 242 59.0 6.8e-07 gi|81175164|sp|Q29411|CH3L1_PIG Chitinase-3-like p ( 383) 241 58.8 7.9e-07 gi|164415932|gb|ABY53363.1| breast regression prot ( 381) 240 58.6 9.1e-07 gi|87130817|gb|AAP41220.2| signal processing prote ( 361) 236 57.8 1.5e-06 gi|126306693|ref|XP_001364834.1| PREDICTED: simila ( 380) 235 57.6 1.9e-06 gi|49258394|pdb|1OWQ|A Chain A, Crystal Structure ( 361) 234 57.4 2.1e-06 gi|54125563|gb|AAV30548.1| signal processing prote ( 361) 232 56.9 2.8e-06 gi|2286219|gb|AAB64304.1| chitinase-like protein 1 ( 332) 230 56.5 3.5e-06 gi|29726400|pdb|1LJY|A Chain A, Crystal Structure ( 361) 230 56.5 3.7e-06 gi|146386691|pdb|2PI6|A Chain A, Crystal Structure ( 361) 230 56.5 3.7e-06 gi|66361429|pdb|1ZBV|A Chain A, Crystal Structure ( 361) 230 56.5 3.7e-06 gi|57012587|sp|Q6TMG6|CH3L1_SHEEP Chitinase-3-like ( 361) 230 56.5 3.7e-06 gi|48425741|pdb|1SYT|A Chain A, Crystal Structure ( 361) 230 56.5 3.7e-06 gi|57012594|sp|Q7YS85|CH3L1_BUBBU Chitinase-3-like ( 361) 230 56.5 3.7e-06 gi|81175163|sp|P30922|CH3L1_BOVIN Chitinase-3-like ( 383) 230 56.5 3.8e-06 gi|55976543|sp|Q8SPQ0.1|CH3L1_CAPHI Chitinase-3-li ( 383) 230 56.5 3.8e-06 gi|146331674|gb|ABQ22343.1| chitinase-3-like 1 pre ( 77) 221 54.1 4.1e-06 gi|119927862|ref|XP_001255878.1| PREDICTED: simila ( 190) 224 55.0 5.4e-06 gi|61555233|gb|AAX46682.1| chitinase 3-like 1 [Bos ( 391) 224 55.3 9.3e-06 gi|194036489|ref|XP_001926654.1| PREDICTED: simila ( 428) 221 54.7 1.5e-05 gi|76613223|ref|XP_591204.2| PREDICTED: similar to ( 387) 216 53.6 2.9e-05 gi|109013551|ref|XP_001093397.1| PREDICTED: chitin ( 390) 213 53.0 4.5e-05 gi|119576885|gb|EAW56481.1| chitinase 3-like 2, is ( 311) 209 52.1 6.8e-05 gi|62898193|dbj|BAD97036.1| chitinase 3-like 2 var ( 378) 209 52.2 7.9e-05 gi|68533253|ref|NP_001020368.1| chitinase 3-like 2 ( 380) 209 52.2 7.9e-05 gi|1457941|gb|AAC50597.1| YKL-39 precursor ( 385) 209 52.2 8e-05 >>gi|62088498|dbj|BAD92696.1| chitinase 3-like 1 variant (154 aa) initn: 1107 init1: 1107 opt: 1107 Z-score: 1257.9 bits: 238.9 E(): 2e-61 Smith-Waterman score: 1107; 100.000% identity (100.000% similar) in 154 aa overlap (1-154:1-154) 10 20 30 40 50 60 ah0314 GCRMEQELKEIWRVASPGDLQGLGTTPHTAFSLLSAQICDFLRGATVHRILGQQVPYATK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 GCRMEQELKEIWRVASPGDLQGLGTTPHTAFSLLSAQICDFLRGATVHRILGQQVPYATK 10 20 30 40 50 60 70 80 90 100 110 120 ah0314 GNQWVGYDDQESVKSKVGFPKATPQDKEKEGGPAPSSQIPVPCTEVWAGLTEHMCPVHTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 GNQWVGYDDQESVKSKVGFPKATPQDKEKEGGPAPSSQIPVPCTEVWAGLTEHMCPVHTL 70 80 90 100 110 120 130 140 150 ah0314 GQGTQPCSSGPPLPGAVPEGQAAGGRHGMGPGPG :::::::::::::::::::::::::::::::::: gi|620 GQGTQPCSSGPPLPGAVPEGQAAGGRHGMGPGPG 130 140 150 >>gi|193787855|dbj|BAG53058.1| unnamed protein product [ (151 aa) initn: 859 init1: 859 opt: 859 Z-score: 978.9 bits: 187.2 E(): 7e-46 Smith-Waterman score: 859; 97.521% identity (98.347% similar) in 121 aa overlap (34-154:31-151) 10 20 30 40 50 60 ah0314 MEQELKEIWRVASPGDLQGLGTTPHTAFSLLSAQICDFLRGATVHRILGQQVPYATKGNQ .: :::::::::::::::::::::::::: gi|193 MTYDFHGAWRGTTGHHSPLFRGQEDASPDRFSNTICDFLRGATVHRILGQQVPYATKGNQ 10 20 30 40 50 60 70 80 90 100 110 120 ah0314 WVGYDDQESVKSKVGFPKATPQDKEKEGGPAPSSQIPVPCTEVWAGLTEHMCPVHTLGQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|193 WVGYDDQESVKSKVGFPKATPQDKEKEGGPAPSSQIPVPCTEVWAGLTEHMCPVHTLGQG 70 80 90 100 110 120 130 140 150 ah0314 TQPCSSGPPLPGAVPEGQAAGGRHGMGPGPG ::::::::::::::::::::::::::::::: gi|193 TQPCSSGPPLPGAVPEGQAAGGRHGMGPGPG 130 140 150 >>gi|29726259|pdb|1HJV|A Chain A, Crystal Structure Of H (362 aa) initn: 280 init1: 280 opt: 292 Z-score: 335.5 bits: 69.4 E(): 4.8e-10 Smith-Waterman score: 292; 68.116% identity (79.710% similar) in 69 aa overlap (14-81:253-321) 10 20 30 40 ah0314 GCRMEQELKEIWRVASPGDLQGL-GTTPHTAFSLLSAQICDFL :..: . :. : . : .: .::::: gi|297 MLRLGAPASKLVMGIPTFGRSFTLASSETGVGAPISGPGIPGRFTKEAGTLAYYEICDFL 230 240 250 260 270 280 50 60 70 80 90 100 ah0314 RGATVHRILGQQVPYATKGNQWVGYDDQESVKSKVGFPKATPQDKEKEGGPAPSSQIPVP ::::::::::::::::::::::::::::::::::: . : gi|297 RGATVHRILGQQVPYATKGNQWVGYDDQESVKSKVQYLKDRQLAGAMVWALDLDDFQGSF 290 300 310 320 330 340 110 120 130 140 150 ah0314 CTEVWAGLTEHMCPVHTLGQGTQPCSSGPPLPGAVPEGQAAGGRHGMGPGPG gi|297 CGQDLRFPLTNAIKDALAAT 350 360 >>gi|114571894|ref|XP_001153571.1| PREDICTED: chitinase (364 aa) initn: 280 init1: 280 opt: 292 Z-score: 335.5 bits: 69.4 E(): 4.8e-10 Smith-Waterman score: 292; 68.116% identity (79.710% similar) in 69 aa overlap (14-81:255-323) 10 20 30 40 ah0314 GCRMEQELKEIWRVASPGDLQGL-GTTPHTAFSLLSAQICDFL :..: . :. : . : .: .::::: gi|114 MLRLGAPASKLVMGIPTFGRSFTLASSETGVGAPISGPGIPGRFTKEAGTLAYYEICDFL 230 240 250 260 270 280 50 60 70 80 90 100 ah0314 RGATVHRILGQQVPYATKGNQWVGYDDQESVKSKVGFPKATPQDKEKEGGPAPSSQIPVP ::::::::::::::::::::::::::::::::::: . : gi|114 RGATVHRILGQQVPYATKGNQWVGYDDQESVKSKVQYLKDRQLAGAMVWALDLDDFQGSF 290 300 310 320 330 340 110 120 130 140 150 ah0314 CTEVWAGLTEHMCPVHTLGQGTQPCSSGPPLPGAVPEGQAAGGRHGMGPGPG gi|114 CGQDLRFPLTNAIKDALAAT 350 360 >>gi|84028186|sp|P36222|CH3L1_HUMAN Chitinase-3-like pro (383 aa) initn: 280 init1: 280 opt: 292 Z-score: 335.2 bits: 69.4 E(): 5e-10 Smith-Waterman score: 292; 68.116% identity (79.710% similar) in 69 aa overlap (14-81:274-342) 10 20 30 40 ah0314 GCRMEQELKEIWRVASPGDLQGL-GTTPHTAFSLLSAQICDFL :..: . :. : . : .: .::::: gi|840 MLRLGAPASKLVMGIPTFGRSFTLASSETGVGAPISGPGIPGRFTKEAGTLAYYEICDFL 250 260 270 280 290 300 50 60 70 80 90 100 ah0314 RGATVHRILGQQVPYATKGNQWVGYDDQESVKSKVGFPKATPQDKEKEGGPAPSSQIPVP ::::::::::::::::::::::::::::::::::: . : gi|840 RGATVHRILGQQVPYATKGNQWVGYDDQESVKSKVQYLKDRQLAGAMVWALDLDDFQGSF 310 320 330 340 350 360 110 120 130 140 150 ah0314 CTEVWAGLTEHMCPVHTLGQGTQPCSSGPPLPGAVPEGQAAGGRHGMGPGPG gi|840 CGQDLRFPLTNAIKDALAAT 370 380 >>gi|109018794|ref|XP_001103739.1| PREDICTED: similar to (383 aa) initn: 280 init1: 280 opt: 292 Z-score: 335.2 bits: 69.4 E(): 5e-10 Smith-Waterman score: 292; 68.116% identity (79.710% similar) in 69 aa overlap (14-81:274-342) 10 20 30 40 ah0314 GCRMEQELKEIWRVASPGDLQGL-GTTPHTAFSLLSAQICDFL :..: . :. : . : .: .::::: gi|109 MLRLGAPASKLVMGIPTFGKSFTLASSETGVGAPISGPGIPGRFTKEAGTLAYYEICDFL 250 260 270 280 290 300 50 60 70 80 90 100 ah0314 RGATVHRILGQQVPYATKGNQWVGYDDQESVKSKVGFPKATPQDKEKEGGPAPSSQIPVP ::::::::::::::::::::::::::::::::::: . : gi|109 RGATVHRILGQQVPYATKGNQWVGYDDQESVKSKVQYLKDRQLAGAMVWALDLDDFQGSF 310 320 330 340 350 360 110 120 130 140 150 ah0314 CTEVWAGLTEHMCPVHTLGQGTQPCSSGPPLPGAVPEGQAAGGRHGMGPGPG gi|109 CGQDLRFPLTNAIKDALAAT 370 380 >>gi|23512215|gb|AAH38354.1| Chitinase 3-like 1 (cartila (383 aa) initn: 280 init1: 280 opt: 292 Z-score: 335.2 bits: 69.4 E(): 5e-10 Smith-Waterman score: 292; 68.116% identity (79.710% similar) in 69 aa overlap (14-81:274-342) 10 20 30 40 ah0314 GCRMEQELKEIWRVASPGDLQGL-GTTPHTAFSLLSAQICDFL :..: . :. : . : .: .::::: gi|235 MLRLGAPASKLVMGIPTFGRSFTLASSETGVGAPISGPGIPGRFTKEAGTLAYYEICDFL 250 260 270 280 290 300 50 60 70 80 90 100 ah0314 RGATVHRILGQQVPYATKGNQWVGYDDQESVKSKVGFPKATPQDKEKEGGPAPSSQIPVP ::::::::::::::::::::::::::::::::::: . : gi|235 RGATVHRILGQQVPYATKGNQWVGYDDQESVKSKVQYLKDRQLAGAMVWALDLDDFQGSF 310 320 330 340 350 360 110 120 130 140 150 ah0314 CTEVWAGLTEHMCPVHTLGQGTQPCSSGPPLPGAVPEGQAAGGRHGMGPGPG gi|235 CGQDLRFPLTNAIKDALAAT 370 380 >>gi|114571890|ref|XP_514111.2| PREDICTED: chitinase 3-l (383 aa) initn: 280 init1: 280 opt: 292 Z-score: 335.2 bits: 69.4 E(): 5e-10 Smith-Waterman score: 292; 68.116% identity (79.710% similar) in 69 aa overlap (14-81:274-342) 10 20 30 40 ah0314 GCRMEQELKEIWRVASPGDLQGL-GTTPHTAFSLLSAQICDFL :..: . :. : . : .: .::::: gi|114 MLRLGAPASKLVMGIPTFGRSFTLASSETGVGAPISGPGIPGRFTKEAGTLAYYEICDFL 250 260 270 280 290 300 50 60 70 80 90 100 ah0314 RGATVHRILGQQVPYATKGNQWVGYDDQESVKSKVGFPKATPQDKEKEGGPAPSSQIPVP ::::::::::::::::::::::::::::::::::: . : gi|114 RGATVHRILGQQVPYATKGNQWVGYDDQESVKSKVQYLKDRQLAGAMVWALDLDDFQGSF 310 320 330 340 350 360 110 120 130 140 150 ah0314 CTEVWAGLTEHMCPVHTLGQGTQPCSSGPPLPGAVPEGQAAGGRHGMGPGPG gi|114 CGQDLRFPLTNAIKDALAAT 370 380 >>gi|30585313|gb|AAP36929.1| Homo sapiens chitinase 3-li (384 aa) initn: 280 init1: 280 opt: 292 Z-score: 335.2 bits: 69.4 E(): 5e-10 Smith-Waterman score: 292; 68.116% identity (79.710% similar) in 69 aa overlap (14-81:274-342) 10 20 30 40 ah0314 GCRMEQELKEIWRVASPGDLQGL-GTTPHTAFSLLSAQICDFL :..: . :. : . : .: .::::: gi|305 MLRLGAPASKLVMGIPTFGRSFTLASSETGVGAPISGPGIPGRFTKEAGTLAYYEICDFL 250 260 270 280 290 300 50 60 70 80 90 100 ah0314 RGATVHRILGQQVPYATKGNQWVGYDDQESVKSKVGFPKATPQDKEKEGGPAPSSQIPVP ::::::::::::::::::::::::::::::::::: . : gi|305 RGATVHRILGQQVPYATKGNQWVGYDDQESVKSKVQYLKDRQLAGAMVWALDLDDFQGSF 310 320 330 340 350 360 110 120 130 140 150 ah0314 CTEVWAGLTEHMCPVHTLGQGTQPCSSGPPLPGAVPEGQAAGGRHGMGPGPG gi|305 CGQDLRFPLTNAIKDALAATL 370 380 >>gi|114571892|ref|XP_001153636.1| PREDICTED: chitinase (389 aa) initn: 280 init1: 280 opt: 292 Z-score: 335.1 bits: 69.5 E(): 5.1e-10 Smith-Waterman score: 292; 68.116% identity (79.710% similar) in 69 aa overlap (14-81:280-348) 10 20 30 40 ah0314 GCRMEQELKEIWRVASPGDLQGL-GTTPHTAFSLLSAQICDFL :..: . :. : . : .: .::::: gi|114 MLRLGAPASKLVMGIPTFGRSFTLASSETGVGAPISGPGIPGRFTKEAGTLAYYEICDFL 250 260 270 280 290 300 50 60 70 80 90 100 ah0314 RGATVHRILGQQVPYATKGNQWVGYDDQESVKSKVGFPKATPQDKEKEGGPAPSSQIPVP ::::::::::::::::::::::::::::::::::: . : gi|114 RGATVHRILGQQVPYATKGNQWVGYDDQESVKSKVQYLKDRQLAGAMVWALDLDDFQGSF 310 320 330 340 350 360 110 120 130 140 150 ah0314 CTEVWAGLTEHMCPVHTLGQGTQPCSSGPPLPGAVPEGQAAGGRHGMGPGPG gi|114 CGQDLRFPLTNAIKDALAAT 370 380 154 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Fri Aug 8 17:23:06 2008 done: Fri Aug 8 17:26:07 2008 Total Scan time: 574.980 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]