hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-22002202/chunk_1/iprscan-20080806-22002202.nocrc
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Query sequence: ah03865
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
SM00111                                                 506.2   1.4e-147   2

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
SM00111           1/2    1469  1578 ..     1   116 []   235.1  5.8e-66
SM00111           2/2    1579  1692 ..     1   116 []   271.1  8.5e-77

Alignments of top-scoring domains:
SM00111: domain 1 of 2, from 1469 to 1578: score 235.1, E = 5.8e-66
                   *->gfviAvHSQttnvPqCPaGweeLWtGYSflmhtgangeGvGQdLgsp
                      gf+i++HSQtt  PqCP+G+ + ++G+S+l+++g n +++GQdLg++
     ah03865  1469    GFLITRHSQTTDAPQCPQGTLQVYEGFSLLYVQG-NKRAHGQDLGTA 1514 

                   GSCLerFrtmPFieCngrgvCnYasRndySFWLstieesdqFraPrpmtp
                   GSCL rF+tmPF++Cn+++vCn+asRndyS+WLst e+     +P++m p
     ah03865  1515 GSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEP-----MPMSMQP 1559 

                   kaGrdlesyiSRCqVCekp<-*
                     G+++++ iSRC+VCe+p   
     ah03865  1560 LKGQSIQPFISRCAVCEAP    1578 

SM00111: domain 2 of 2, from 1579 to 1692: score 271.1, E = 8.5e-77
                   *->gfviAvHSQttnvPqCPaGweeLWtGYSflmhtgangeGvGQdLgsp
                      + viAvHSQt+++P CP+Gw +LW+GYSf+mht+a++eG+GQ+L sp
     ah03865  1579    AVVIAVHSQTIQIPHCPQGWDSLWIGYSFMMHTSAGAEGSGQALASP 1625 

                   GSCLerFrtmPFieCngrgvCnYasRndySFWLstieesdqFraPrpmtp
                   GSCLe+Fr+ PFieC+grg+CnY++ n+ySFWL t++ sd+F +P+++t+
     ah03865  1626 GSCLEEFRSAPFIECHGRGTCNYYA-NSYSFWLATVDVSDMFSKPQSETL 1674 

                   kaGrdlesyiSRCqVCekp<-*
                   kaG dl+++iSRCqVC+k+   
     ah03865  1675 KAG-DLRTRISRCQVCMKR    1692 

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