hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080806/iprscan-20080806-22230914/chunk_1/iprscan-20080806-22230914.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ah04379 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF04704.3.ls Zfx / Zfy transcription activation region 867.5 6.1e-258 1 PF04704.3.fs Zfx / Zfy transcription activation region 861.8 3e-256 2 PF00096.16.ls Zinc finger, C2H2 type 334.1 2.2e-97 13 PF00096.16.fs Zinc finger, C2H2 type 308.6 1.1e-89 13 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF04704.3.fs 1/2 73 154 .. 1 91 [. 170.8 1.4e-50 PF04704.3.ls 1/1 73 414 .. 1 361 [] 867.5 6.1e-258 PF04704.3.fs 2/2 155 414 .. 86 361 .] 691.1 7.7e-205 PF00096.16.fs 1/13 429 451 .. 1 24 [] 29.7 3.8e-06 PF00096.16.ls 1/13 429 451 .. 1 24 [] 31.7 2.4e-06 PF00096.16.ls 2/13 460 482 .. 1 24 [] 23.4 0.00076 PF00096.16.ls 3/13 492 514 .. 1 24 [] 27.4 4.7e-05 PF00096.16.fs 3/13 492 514 .. 1 24 [] 25.4 4.4e-05 PF00096.16.ls 4/13 523 546 .. 1 24 [] 18.2 0.028 PF00096.16.fs 5/13 552 574 .. 1 24 [] 33.5 4.2e-07 PF00096.16.ls 5/13 552 574 .. 1 24 [] 35.5 1.7e-07 PF00096.16.ls 6/13 580 603 .. 1 24 [] 28.3 2.5e-05 PF00096.16.fs 6/13 580 603 .. 1 24 [] 26.3 2.6e-05 PF00096.16.ls 7/13 609 631 .. 1 24 [] 20.9 0.0041 PF00096.16.ls 8/13 637 660 .. 1 24 [] 20.8 0.0046 PF00096.16.fs 9/13 666 688 .. 1 24 [] 26.0 3.2e-05 PF00096.16.ls 9/13 666 688 .. 1 24 [] 27.9 3.3e-05 PF00096.16.fs 11/13 723 745 .. 1 24 [] 31.2 1.6e-06 PF00096.16.ls 11/13 723 745 .. 1 24 [] 33.1 8.7e-07 PF00096.16.ls 12/13 751 774 .. 1 24 [] 25.5 0.00017 PF00096.16.fs 12/13 751 774 .. 1 24 [] 23.6 0.00013 PF00096.16.fs 13/13 780 802 .. 1 24 [] 23.5 0.00013 PF00096.16.ls 13/13 780 802 .. 1 24 [] 25.5 0.00017 Alignments of top-scoring domains: PF04704.3.fs: domain 1 of 2, from 73 to 154: score 170.8, E = 1.4e-50 *->EdvviEdVhCpDIleEtDvVSEgVIIPEqVLeadVGtaiEEdleEEd EdvviEdV+CpDI+eE+D VSE+VIIPEqVL++dV +EE+ ah04379 73 EDVVIEDVQCPDIMEEAD-VSETVIIPEQVLDSDV--------TEEV 110 SLaqclvPDdiLtSeltsesltvPEhvlvsesvHvsdvGHvEhV<-* SLa+c+vPDd+L+S++ts+s+++PEhvl+ +s+HvsdvGHv hV ah04379 111 SLAHCTVPDDVLASDITSASMSMPEHVLTGDSIHVSDVGHVGHV 154 PF04704.3.ls: domain 1 of 1, from 73 to 414: score 867.5, E = 6.1e-258 *->EdvviEdVhCpDIleEtDvVSEgVIIPEqVLeadVGtaiEEdleEEd EdvviEdV+CpDI+eE+D VSE+VIIPEqVL++dV +EE+ ah04379 73 EDVVIEDVQCPDIMEEAD-VSETVIIPEQVLDSDV--------TEEV 110 SLaqclvPDdiLtSeltsesltvPEhvlvsesvHvsd......vGHvEhV SLa+c+vPDd+L+S++ts+s+++PEhvl+ +s+Hvsd ++ ++vGHvEhV ah04379 111 SLAHCTVPDDVLASDITSASMSMPEHVLTGDSIHVSDvghvghVGHVEHV 160 vhDsVvgeEivddPltaDmvSeEVLVADCvSEAVIdAnGGvPGstvtIpv vhDsVv++Eiv+dPlt D+vSeEVLVADC+SEAVIdAnG Ipv ah04379 161 VHDSVVEAEIVTDPLTTDVVSEEVLVADCASEAVIDANG--------IPV 202 eqqDdDkvnstCEDYLMISLDDaGeKiehdGsseltmgseseqDssKlDG +qqDdDk+n CEDYLMISLDDa +KiehdGss++tm+ ese+D++K+DG ah04379 203 DQQDDDKGN--CEDYLMISLDDA-GKIEHDGSSGMTMDTESEIDPCKVDG 249 acpEVIKVYIFKADpeeDvDlGGTvdivESEsenghgvagvLDqsnsiRv +cpEVIKVYIFKADp+eD DlGGTvdivESE+en+hgv ++LDq+ siRv ah04379 250 TCPEVIKVYIFKADPGED-DLGGTVDIVESEPENDHGV-ELLDQNSSIRV 297 pRekMVYMtVnDSqqEedDlsvAEIADEVYMEVIVGEEDAtslaadlPeh pRekMVYMtVnDSq E++Dl+vAEIADEVYMEVIVGEEDA+ aa h ah04379 298 PREKMVYMTVNDSQPEDEDLNVAEIADEVYMEVIVGEEDAAAAAAAAAVH 347 eqQledsEinKTafmPvaWAAAYGNnlDsgiEsRngTASalLhiDESiGl eqQ++d+Ei KT fmP+aWAAAYGNn+D giE+RngTASalLhiDES+Gl ah04379 348 EQQMDDNEI-KT-FMPIAWAAAYGNNSD-GIENRNGTASALLHIDESAGL 394 drvlKQKaKKrRRgEsRQYq<-* +r++KQK+KKrRR++sRQYq ah04379 395 GRLAKQKPKKRRRPDSRQYQ 414 PF04704.3.fs: domain 2 of 2, from 155 to 414: score 691.1, E = 7.7e-205 *->GHvEhVvhDsVvgeEivddPltaDmvSeEVLVADCvSEAVIdAnGGv GHvEhVvhDsVv++Eiv+dPlt D+vSeEVLVADC+SEAVIdAnG ah04379 155 GHVEHVVHDSVVEAEIVTDPLTTDVVSEEVLVADCASEAVIDANG-- 199 PGstvtIpveqqDdDkvnstCEDYLMISLDDaGeKiehdGsseltmgses Ipv+qqDdDk+n CEDYLMISLDDa +KiehdGss++tm+ es ah04379 200 ------IPVDQQDDDKGN--CEDYLMISLDDA-GKIEHDGSSGMTMDTES 240 eqDssKlDGacpEVIKVYIFKADpeeDvDlGGTvdivESEsenghgvagv e+D++K+DG+cpEVIKVYIFKADp+eD DlGGTvdivESE+en+hgv ++ ah04379 241 EIDPCKVDGTCPEVIKVYIFKADPGED-DLGGTVDIVESEPENDHGV-EL 288 LDqsnsiRvpRekMVYMtVnDSqqEedDlsvAEIADEVYMEVIVGEEDAt LDq+ siRvpRekMVYMtVnDSq E++Dl+vAEIADEVYMEVIVGEEDA+ ah04379 289 LDQNSSIRVPREKMVYMTVNDSQPEDEDLNVAEIADEVYMEVIVGEEDAA 338 slaadlPeheqQledsEinKTafmPvaWAAAYGNnlDsgiEsRngTASal aa heqQ++d+Ei KT fmP+aWAAAYGNn+D giE+RngTASal ah04379 339 AAAAAAAVHEQQMDDNEI-KT-FMPIAWAAAYGNNSD-GIENRNGTASAL 385 LhiDESiGldrvlKQKaKKrRRgEsRQYq<-* LhiDES+Gl+r++KQK+KKrRR++sRQYq ah04379 386 LHIDESAGLGRLAKQKPKKRRRPDSRQYQ 414 PF00096.16.fs: domain 1 of 13, from 429 to 451: score 29.7, E = 3.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C +Cgk+F++++ LkrH++ H ah04379 429 YPCM-ICGKKFKSRGFLKRHMKNH 451 PF00096.16.ls: domain 1 of 13, from 429 to 451: score 31.7, E = 2.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C +Cgk+F++++ LkrH++ H ah04379 429 YPCM-ICGKKFKSRGFLKRHMKNH 451 PF00096.16.ls: domain 2 of 13, from 460 to 482: score 23.4, E = 0.00076 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dC+++ + k +L++Hl +H ah04379 460 YRCT-DCDYTTNKKISLHNHLESH 482 PF00096.16.ls: domain 3 of 13, from 492 to 514: score 27.4, E = 4.7e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +C+ +Cgk Fs+ + L +H+++H ah04379 492 IECD-ECGKHFSHAGALFTHKMVH 514 PF00096.16.fs: domain 3 of 13, from 492 to 514: score 25.4, E = 4.4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +C+ +Cgk Fs+ + L +H+++H ah04379 492 IECD-ECGKHFSHAGALFTHKMVH 514 PF00096.16.ls: domain 4 of 13, from 523 to 546: score 18.2, E = 0.028 *->ykCpfdCgksFsrksnLkrHlrt.H<-* +kC+ C + ++ L+rHl H ah04379 523 HKCK-FCEYETAEQGLLNRHLLAvH 546 PF00096.16.fs: domain 5 of 13, from 552 to 574: score 33.5, E = 4.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C +Cgk F+++s+Lk+H+r+H ah04379 552 HICV-ECGKGFRHPSELKKHMRIH 574 PF00096.16.ls: domain 5 of 13, from 552 to 574: score 35.5, E = 1.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C +Cgk F+++s+Lk+H+r+H ah04379 552 HICV-ECGKGFRHPSELKKHMRIH 574 PF00096.16.ls: domain 6 of 13, from 580 to 603: score 28.3, E = 2.5e-05 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y+C+ +C ++ ++snLk+H +t+H ah04379 580 YQCQ-YCEYRSADSSNLKTHVKTkH 603 PF00096.16.fs: domain 6 of 13, from 580 to 603: score 26.3, E = 2.6e-05 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y+C+ +C ++ ++snLk+H +t+H ah04379 580 YQCQ-YCEYRSADSSNLKTHVKTkH 603 PF00096.16.ls: domain 7 of 13, from 609 to 631: score 20.9, E = 0.0041 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +C +Fs+ ++ ++H +H ah04379 609 FKCD-ICLLTFSDTKEVQQHALIH 631 PF00096.16.ls: domain 8 of 13, from 637 to 660: score 20.8, E = 0.0046 *->ykCpfdCgksFsrksnLkrHlrt.H<-* ++C +C+ + s++s+LkrH+ + H ah04379 637 HQCL-HCDHKSSNSSDLKRHIISvH 660 PF00096.16.fs: domain 9 of 13, from 666 to 688: score 26.0, E = 3.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ C+k F r+s+Lk+H H ah04379 666 HKCD-MCDKGFHRPSELKKHVAAH 688 PF00096.16.ls: domain 9 of 13, from 666 to 688: score 27.9, E = 3.3e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ C+k F r+s+Lk+H H ah04379 666 HKCD-MCDKGFHRPSELKKHVAAH 688 PF00096.16.fs: domain 11 of 13, from 723 to 745: score 31.2, E = 1.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ C k F+++s+Lk+H++tH ah04379 723 FRCK-RCRKGFRQQSELKKHMKTH 745 PF00096.16.ls: domain 11 of 13, from 723 to 745: score 33.1, E = 8.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ C k F+++s+Lk+H++tH ah04379 723 FRCK-RCRKGFRQQSELKKHMKTH 745 PF00096.16.ls: domain 12 of 13, from 751 to 774: score 25.5, E = 0.00017 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y+C+ +C +s ++ s +krH + H ah04379 751 YQCE-YCEYSTTDASGFKRHVISiH 774 PF00096.16.fs: domain 12 of 13, from 751 to 774: score 23.6, E = 0.00013 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y+C+ +C +s ++ s +krH + H ah04379 751 YQCE-YCEYSTTDASGFKRHVISiH 774 PF00096.16.fs: domain 13 of 13, from 780 to 802: score 23.5, E = 0.00013 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +C+k F+r+s+ ++H+++H ah04379 780 HRCE-YCKKGFRRPSEKNQHIMRH 802 PF00096.16.ls: domain 13 of 13, from 780 to 802: score 25.5, E = 0.00017 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +C+k F+r+s+ ++H+++H ah04379 780 HRCE-YCKKGFRRPSEKNQHIMRH 802 //