hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-22230914/chunk_1/iprscan-20080806-22230914.nocrc
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Query sequence: ah04379
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 329.3    2.7e-94  13

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/13    429   451 ..     1    23 []    33.4  3.1e-05
SM00355      2/13    460   482 ..     1    23 []    24.3    0.017
SM00355      3/13    492   514 ..     1    23 []    25.3   0.0087
SM00355      4/13    523   546 ..     1    23 []    23.2    0.037
SM00355      5/13    552   574 ..     1    23 []    29.6  0.00043
SM00355      6/13    580   603 ..     1    23 []    26.7   0.0033
SM00355      7/13    609   631 ..     1    23 []    20.3     0.27
SM00355      8/13    637   660 ..     1    23 []    20.9     0.17
SM00355      9/13    666   688 ..     1    23 []    26.8    0.003
SM00355     10/13    694   717 ..     1    23 []    19.7     0.42
SM00355     11/13    723   745 ..     1    23 []    28.0   0.0013
SM00355     12/13    751   774 ..     1    23 []    27.8   0.0015
SM00355     13/13    780   802 ..     1    23 []    23.3    0.035

Alignments of top-scoring domains:
SM00355: domain 1 of 13, from 429 to 451: score 33.4, E = 3.1e-05
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C i Cgk+f+s++ LkrHm+ H   
     ah04379   429    YPCMI-CGKKFKSRgFLKRHMKNH    451  

SM00355: domain 2 of 13, from 460 to 482: score 24.3, E = 0.017
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C+  C+++++ k +L +H+ +H   
     ah04379   460    YRCTD-CDYTTNKKiSLHNHLESH    482  

SM00355: domain 3 of 13, from 492 to 514: score 25.3, E = 0.0087
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                       +C++ Cgk+fs+++aL  H +vH   
     ah04379   492    IECDE-CGKHFSHAgALFTHKMVH    514  

SM00355: domain 4 of 13, from 523 to 546: score 23.2, E = 0.037
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      +kC++ C + +  ++ L+rH+  vH   
     ah04379   523    HKCKF-CEYETAEQgLLNRHLLaVH    546  

SM00355: domain 5 of 13, from 552 to 574: score 29.6, E = 0.00043
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C + Cgk f+++++Lk+Hmr+H   
     ah04379   552    HICVE-CGKGFRHPsELKKHMRIH    574  

SM00355: domain 6 of 13, from 580 to 603: score 26.7, E = 0.0033
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y+C++ C ++  + ++Lk H++++H   
     ah04379   580    YQCQY-CEYRSADSsNLKTHVKtKH    603  

SM00355: domain 7 of 13, from 609 to 631: score 20.3, E = 0.27
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC+i C  +fs+ ++ ++H  +H   
     ah04379   609    FKCDI-CLLTFSDTkEVQQHALIH    631  

SM00355: domain 8 of 13, from 637 to 660: score 20.9, E = 0.17
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      ++C + C+ + s+ ++LkrH+ +vH   
     ah04379   637    HQCLH-CDHKSSNSsDLKRHIIsVH    660  

SM00355: domain 9 of 13, from 666 to 688: score 26.8, E = 0.003
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ C+k f+++++Lk+H+  H   
     ah04379   666    HKCDM-CDKGFHRPsELKKHVAAH    688  

SM00355: domain 10 of 13, from 694 to 717: score 19.7, E = 0.42
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      ++C + C+++  ++  L rH+ +vH   
     ah04379   694    HQCRH-CDFKIADPfVLSRHILsVH    717  

SM00355: domain 11 of 13, from 723 to 745: score 28.0, E = 0.0013
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C+  C k f+++++Lk+Hm++H   
     ah04379   723    FRCKR-CRKGFRQQsELKKHMKTH    745  

SM00355: domain 12 of 13, from 751 to 774: score 27.8, E = 0.0015
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y+C++ C +s+++++ +krH+ ++H   
     ah04379   751    YQCEY-CEYSTTDAsGFKRHVIsIH    774  

SM00355: domain 13 of 13, from 780 to 802: score 23.3, E = 0.035
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ C+k f+++++ ++H+++H   
     ah04379   780    HRCEY-CKKGFRRPsEKNQHIMRH    802  

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