hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080806/iprscan-20080806-22291729/chunk_1/iprscan-20080806-22291729.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ah04440 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00856.18.ls SET domain 176.9 4.7e-50 1 PF00856.18.fs SET domain 175.4 1.3e-49 1 PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or 26.5 1.1e-06 1 PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or 24.5 0.00034 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00076.12.ls 1/1 98 169 .. 1 74 [] 24.5 0.00034 PF00076.12.fs 1/1 112 169 .. 15 74 .] 26.5 1.1e-06 PF00856.18.fs 1/1 1564 1693 .. 1 259 [] 175.4 1.3e-49 PF00856.18.ls 1/1 1564 1693 .. 1 259 [] 176.9 4.7e-50 Alignments of top-scoring domains: PF00076.12.ls: domain 1 of 1, from 98 to 169: score 24.5, E = 0.00034 *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV + L+ ++ e Lkd+ +k+G++e+++i + t ++ G a V ah04440 98 VTFARLNDNVRETFLKDMCRKYGEVEEVEILLH--PRTRKHLGLARV 142 eFedeedAekAldalnGkelggrelrv<-* F++ ++A++ +++l+ + ++g+ ++ ah04440 143 LFTSTRGAKETVKNLHLTSVMGNIIHA 169 PF00076.12.fs: domain 1 of 1, from 112 to 169: score 26.5, E = 1.1e-06 *->LkdlFskfGpiesikivrDttretgrskGfaFVeFedeedAekAlda Lkd+ +k+G++e+++i + t ++ G a V F++ ++A++ +++ ah04440 112 LKDMCRKYGEVEEVEILLH--PRTRKHLGLARVLFTSTRGAKETVKN 156 lnGkelggrelrv<-* l+ + ++g+ ++ ah04440 157 LHLTSVMGNIIHA 169 PF00856.18.fs: domain 1 of 1, from 1564 to 1693: score 175.4, E = 1.3e-49 *->vqkgkwlrlegfkteikGwGlratedIpkGefiiEYpGelitseeae ++k ++++l ++++i+ wGl+a+e+I+++e++iEY+G i++ a+ ah04440 1564 QLKFRKKKLRFGRSRIHEWGLFAMEPIAADEMVIEYVGQNIRQMVAD 1610 kreddllglklydndgdksldeYlfdldalfLlyEklkSfWkpYiiLPdy +re k+y ++g++s+ Ylf+ d+ ah04440 1611 MRE------KRYVQEGIGSS--YLFRVDH--------------------- 1631 sPlfWseeellLkGtqlletdkleleeydllaeeievvlqhklFpdveee ah04440 - -------------------------------------------------- - fsfedflWaasivsSRafslvegvnresensegslelviDAtrkGNiaRF + +iDAt+ GN+aRF ah04440 1632 -----------------------------------DTIIDATKCGNLARF 1646 iNHSCePNcevqvvfvdgedpgsdedaglepgdprivlfAlrdIpaGeEL iNH C+PNc+++v++++ + ++iv++++++I +eE+ ah04440 1647 INHCCTPNCYAKVITIE--------------SQKKIVIYSKQPIGVDEEI 1682 tydYgydksnge<-* tydY+ ++ +++ ah04440 1683 TYDYK-FPLEDN 1693 PF00856.18.ls: domain 1 of 1, from 1564 to 1693: score 176.9, E = 4.7e-50 *->vqkgkwlrlegfkteikGwGlratedIpkGefiiEYpGelitseeae ++k ++++l ++++i+ wGl+a+e+I+++e++iEY+G i++ a+ ah04440 1564 QLKFRKKKLRFGRSRIHEWGLFAMEPIAADEMVIEYVGQNIRQMVAD 1610 kreddllglklydndgdksldeYlfdldalfLlyEklkSfWkpYiiLPdy +re k+y ++g++s+ Ylf+ d+ ah04440 1611 MRE------KRYVQEGIGSS--YLFRVDH--------------------- 1631 sPlfWseeellLkGtqlletdkleleeydllaeeievvlqhklFpdveee ah04440 - -------------------------------------------------- - fsfedflWaasivsSRafslvegvnresensegslelviDAtrkGNiaRF + +iDAt+ GN+aRF ah04440 1632 -----------------------------------DTIIDATKCGNLARF 1646 iNHSCePNcevqvvfvdgedpgsdedaglepgdprivlfAlrdIpaGeEL iNH C+PNc+++v++++ + ++iv++++++I +eE+ ah04440 1647 INHCCTPNCYAKVITIE--------------SQKKIVIYSKQPIGVDEEI 1682 tydYgydksnge<-* tydY+ ++ +++ ah04440 1683 TYDYK-FPLEDN 1693 //