hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-22291729/chunk_1/iprscan-20080806-22291729.nocrc
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Query sequence: ah04440
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00317                                                 132.2    5.4e-35   1
SM00360                                                  35.2    8.6e-06   1
SM00508                                                  31.0    0.00016   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00360     1/1      97   170 ..     1   121 []    35.2  8.6e-06
SM00317     1/1    1570  1693 ..     1   114 []   132.2  5.4e-35
SM00508     1/1    1693  1709 .]     1    17 []    31.0  0.00016

Alignments of top-scoring domains:
SM00360: domain 1 of 1, from 97 to 170: score 35.2, E = 8.6e-06
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                       +    L  +++v e  L++++              +k+G+v++v i
     ah04440    97    EVTFARL--NDNVRETFLKDMC--------------RKYGEVEEVEI 127  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   + ++                      T+k+ G a V F + + A+    +
     ah04440   128 LLHPR---------------------TRKHLGLARVLFTSTRGAKET--V 154  

                   ealnaskGkeledgGrptlglrVe<-*
                   ++l+    + +  +G+    ++ +   
     ah04440   155 KNLH---LTSV--MGNI---IHAQ    170  

SM00317: domain 1 of 1, from 1570 to 1693: score 132.2, E = 5.4e-35
                   *->aklevfkskgkGwGlratedIpkGefIleyvGeii............
                      +kl+  +s ++ wGl+a+e+I+++e+++eyvG  i++   + ++++ 
     ah04440  1570    KKLRFGRSRIHEWGLFAMEPIAADEMVIEYVGQNIrqmvadmrekry 1616 

                   .......fylfd.....ciDatranggkGniarfiNHSCePNcelifvev
                    +++ +++ylf+ ++++ iDat+     Gn+arfiNH+C+PNc+++++ +
     ah04440  1617 vqegigsSYLFRvdhdtIIDATK----CGNLARFINHCCTPNCYAKVITI 1662 

                   dgfdprgasdsadprivifAlrdIkpGEELtidYgddyege<-*
                   +            ++ivi+++++I  +EE+t+dY++ +e++   
     ah04440  1663 ES----------QKKIVIYSKQPIGVDEEITYDYKFPLEDN    1693 

SM00508: domain 1 of 1, from 1693 to 1709: score 31.0, E = 0.00016
                   *->kkqpClCGaanCrGfLg<-*
                      +k+pClCG++ CrG L+   
     ah04440  1693    NKIPCLCGTESCRGSLN    1709 

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