hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-22360352/chunk_1/iprscan-20080806-22360352.nocrc
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Query sequence: ah04445y1
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00242                                                1265.4          0   1
SM00015                                                  29.3    0.00052   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00242    1/1     104   847 ..     1   771 []  1265.4        0
SM00015    1/1     848   870 ..     1    23 []    29.3  0.00052

Alignments of top-scoring domains:
SM00242: domain 1 of 1, from 104 to 847: score 1265.4, E = 0
                   *->rnppkfegVeDmvlLtyLnEpavlhNLkkRYlkdlIYTYiGlvLvav
                      +nppkf + eDm++Lt+LnE++vlhNL+ RY+++lIYTY+Gl++v++
   ah04445y1   104    MNPPKFSKAEDMAELTCLNEASVLHNLRERYYSGLIYTYSGLFCVVI 150  

                   NPYkqlppiYtdevikkYrekkdldGksrgElpPHvFAiADeAYrnMlre
                   NPYkql piYt+ ++++Yr      Gk+r+E+pPHv+A+ + AYr+Ml++
   ah04445y1   151 NPYKQL-PIYTEAIVEMYR------GKKRHEVPPHVYAVTEGAYRSMLQD 193  

                   keNQsIiISGESGAGKTEatKkimqYLAavsg.................s
                   +e+QsI+++GESGAGKTE+tKk++qYLA+v+++++++++++ + + ++ s
   ah04445y1   194 REDQSILCTGESGAGKTENTKKVIQYLAHVASspkgrkepgvpasvstvS 243  

                   vesvedqiLesNPiLEAFGNAKTvRNnNSSRFGKfieIhFdekGkivGAk
                    + +e q+L++NPiLEAFGNAKTv+N+NSSRFGKfi+I+Fd  G ivGA+
   ah04445y1   244 YGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVGAN 293  

                   IenYLLEKSRVVsQakgERNYHIFYQLLaGaseelkkelgLskFSksped
                   Ie+YLLEKSR ++Qak+E ++HIFYQLL Ga e+lk  l+L++    ++ 
   ah04445y1   294 IETYLLEKSRAIRQAKDECSFHIFYQLLGGAGEQLKADLLLEP----CSH 339  

                   YkYLnqggtpfankryssgcltvdgiDDaeeFkeTdEvtlkAmrvlGfse
                   Y++L++g              + +     e F+eT E    ++rvlGfs+
   ah04445y1   340 YRFLTNGP-------------SSSPGQERELFQETLE----SLRVLGFSH 372  

                   eEqesIFrilAAILHLGNieFeegrntgdnaavtslkvadeeelqkaAeL
                   eE+ s++r ++A+L  GNi  + +rn   ++a      +d +++qk+++L
   ah04445y1   373 EEIISMLRMVSAVLQFGNIALKRERN--TDQAT----MPDNTAAQKLCRL 416  

                   LgvdpeeLekaLtkRkiktggeggsvitkplnveqAvyaRDALAKaiYsR
                   Lg+ ++++ +aL++++ik+g++   ++ k++++eqA +a  ALAKa Y+R
   ah04445y1   417 LGLGVTDFSRALLTPRIKVGRD---YVQKAQTKEQADFALEALAKATYER 463  

                   LFdWLVkrINksl......sayfIGVLDIyGFEiFekNSFEQfCINyaNE
                   LF WLV r+N++l++++++ a+f G+LDI+GFEiF+ NSFEQ+CINy+NE
   ah04445y1   464 LFRWLVLRLNRALdrsprqGASFLGILDIAGFEIFQLNSFEQLCINYTNE 513  

                   KLQQfFnqhvFKlEQEEYerEGIeWtfIdFfliDNQpciDLIEkKgkrPl
                   KLQQ+Fn+ +F+lEQEEY+rEGI+Wtf dF+l D+QpciDLIE ++ +P+
   ah04445y1   514 KLQQLFNHTMFVLEQEEYQREGIPWTFLDFGL-DLQPCIDLIERPA-NPP 561  

                   GIlslLDEeClfHAqPkgTDqtFleKLnkalyhqhhkkhphfskprkSlk
                   G+l+lLDEeC+f   Pk+TD++F+eK       q  ++hp+f+ pr    
   ah04445y1   562 GLLALLDEECWF---PKATDKSFVEKV-----AQEQGGHPKFQRPRH--- 600  

                   kgkpkkrfgrtaFiikHYAGdVtYnveGFLeKNkDtLfedlieLlqsSkn
                          +++++F++ HYAG+V+Y ++ +L KN+D+L++++ +Ll++S++
   ah04445y1   601 ------LRDQADFSVLHYAGKVDYKANEWLMKNMDPLNDNVAALLHQSTD 644  

                   pliasLFpeeadqsssaakekss.ggagksrkagr.r.eps.k.......
                   +l a+++++              +gg +  ++ g+ +++p ++ ++ ++ 
   ah04445y1   645 RLTAEIWKD-------------EhGGFQQFSFLGSfPpSPPgSaercssa 681  

                   ...........................gtisskkrppTvGsqFk.sLneL
                    ++++ ++  + ++ ++ +++++++++     +++++TvG+++k+sL+ L
   ah04445y1   682 isppgvegivgleqvsslgdgppggrpR----RGMFRTVGQLYKeSLSRL 727  

                   metLnstnPHFIRCIKPNeeKkpgvFdaslVlhQLrylGvLEniRIRraG
                   m+tL++tnP F+RCI PN+eK++g+ ++ lVl+QLr++GvLE+iRI+r G
   ah04445y1   728 MATLSNTNPSFVRCIVPNHEKRAGKLEPRLVLDQLRCNGVLEGIRICRQG 777  

                   FPyRlpfdeFlqRYkvLlpktwppwggewknrlfgdakkacealLqslgl
                   FP+R+ f+eF+qRY+ +l ++  p+g       f+d k+ace+++q+l+ 
   ah04445y1   778 FPNRILFQEFRQRYE-ILTPNAIPKG-------FMDGKQACEKMIQALE- 818  

                   giegdnldeeeyqiGkTKvFlRnpgqlaeLEelRee<-*
                         ld++ y++G +K+F+R +g+la LEe+R+    
   ah04445y1   819 ------LDPNLYRVGQSKIFFR-AGVLAQLEEERDL    847  

SM00015: domain 1 of 1, from 848 to 870: score 29.3, E = 0.00052
                   *->rleraAiiIQaawRGylaRkryk<-*
                      +++ +++ +Qaa+RGylaR+ ++   
   ah04445y1   848    KVTDIIVSFQAAARGYLARRAFQ    870  

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