hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-22415986/chunk_1/iprscan-20080806-22415986.nocrc
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Query sequence: ah04488
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00169.19.fs PH domain                                       83.2    7.5e-25   1
PF00169.19.ls PH domain                                       85.2    1.9e-22   1
PF00397.16.ls WW domain                                       60.6    4.7e-15   2
PF00397.16.fs WW domain                                       56.6    7.1e-15   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00397.16.ls   1/2      16    45 ..     1    30 []    24.1  0.00047
PF00397.16.fs   1/2      16    45 ..     1    30 []    22.1  3.3e-05
PF00397.16.fs   2/2      61    90 ..     1    30 []    34.5  1.1e-08
PF00397.16.ls   2/2      61    90 ..     1    30 []    36.5  8.3e-08
PF00169.19.fs   1/1     170   287 ..     1    92 []    83.2  7.5e-25
PF00169.19.ls   1/1     170   287 ..     1    92 []    85.2  1.9e-22

Alignments of top-scoring domains:
PF00397.16.ls: domain 1 of 2, from 16 to 45: score 24.1, E = 0.00047
                   *->lppgWeertdpdGrpYYyNhnTktTqWekP<-*
                      lp+ W      dGr++++N + + T+W +P   
     ah04488    16    LPEHWSYGVCRDGRVFFINDQLRCTTWLHP    45   

PF00397.16.fs: domain 1 of 2, from 16 to 45: score 22.1, E = 3.3e-05
                   *->lppgWeertdpdGrpYYyNhnTktTqWekP<-*
                      lp+ W      dGr++++N + + T+W +P   
     ah04488    16    LPEHWSYGVCRDGRVFFINDQLRCTTWLHP    45   

PF00397.16.fs: domain 2 of 2, from 61 to 90: score 34.5, E = 1.1e-08
                   *->lppgWeertdpdGrpYYyNhnTktTqWekP<-*
                      lp gWee ++++G  Y+++hn +tT + +P   
     ah04488    61    LPRGWEEGFTEEGASYFIDHNQQTTAFRHP    90   

PF00397.16.ls: domain 2 of 2, from 61 to 90: score 36.5, E = 8.3e-08
                   *->lppgWeertdpdGrpYYyNhnTktTqWekP<-*
                      lp gWee ++++G  Y+++hn +tT + +P   
     ah04488    61    LPRGWEEGFTEEGASYFIDHNQQTTAFRHP    90   

PF00169.19.fs: domain 1 of 1, from 170 to 287: score 83.2, E = 7.5e-25
                   *->vikeGwLlkkg..gkkswkkRyfvLfddvLlyykdkk.kkpkgsipL
                      v+ +GwL+k+ ++g + wk+R+fvL d +L+yykd+ ++   gsipL
     ah04488   170    VVVRGWLHKQDssGMRLWKRRWFVLADYCLFYYKDSReEAVLGSIPL 216  

                   sgiqvtkvpdn...krkncFeirt.dr...................etll
                    ++ + +v + ++  rk++F+ ++++ +    ++++ +++ ++++ +t++
     ah04488   217 PSYVISPVAPEdriSRKYSFKAVHtGMraliynsstagsqaeqsgmRTYY 266  

                   lqaeseeerkeWvkaiqsair<-*
                   ++a+++e+++ Wv+a+++a+    
     ah04488   267 FSADTQEDMNAWVRAMNQAAQ    287  

PF00169.19.ls: domain 1 of 1, from 170 to 287: score 85.2, E = 1.9e-22
                   *->vikeGwLlkkg..gkkswkkRyfvLfddvLlyykdkk.kkpkgsipL
                      v+ +GwL+k+ ++g + wk+R+fvL d +L+yykd+ ++   gsipL
     ah04488   170    VVVRGWLHKQDssGMRLWKRRWFVLADYCLFYYKDSReEAVLGSIPL 216  

                   sgiqvtkvpdn...krkncFeirt.dr...................etll
                    ++ + +v + ++  rk++F+ ++++ +    ++++ +++ ++++ +t++
     ah04488   217 PSYVISPVAPEdriSRKYSFKAVHtGMraliynsstagsqaeqsgmRTYY 266  

                   lqaeseeerkeWvkaiqsair<-*
                   ++a+++e+++ Wv+a+++a+    
     ah04488   267 FSADTQEDMNAWVRAMNQAAQ    287  

//