hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-22415986/chunk_1/iprscan-20080806-22415986.nocrc
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Query sequence: ah04488
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00233                                                  79.8    3.4e-19   1
SM00456                                                  54.9      1e-11   2

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00456     1/2      15    47 ..     1    34 []    22.2    0.071
SM00456     2/2      60    92 ..     1    34 []    32.7  5.1e-05
SM00233     1/1     170   289 ..     1    82 []    79.8  3.4e-19

Alignments of top-scoring domains:
SM00456: domain 1 of 2, from 15 to 47: score 22.2, E = 0.071
                   *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-*
                      +lP+ W     +d Gr++++N + + t+W +Pr    
     ah04488    15    TLPEHWSYGVCRD-GRVFFINDQLRCTTWLHPRT    47   

SM00456: domain 2 of 2, from 60 to 92: score 32.7, E = 5.1e-05
                   *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-*
                      +lP gWee ++++ G  Y+++h+ ++t + +P+    
     ah04488    60    DLPRGWEEGFTEE-GASYFIDHNQQTTAFRHPVT    92   

SM00233: domain 1 of 1, from 170 to 289: score 79.8, E = 3.4e-19
                   *->vikeGwLlkks...k.swkkryfvLfngvLlyyksk...kpkgsipL
                      v+ +GwL+k+ +++ + wk+r+fvL + +L+yyk++++++  gsipL
     ah04488   170    VVVRGWLHKQDssgMrLWKRRWFVLADYCLFYYKDSreeAVLGSIPL 216  

                   sgcsvre.p.........cFeivt.dr....................tll
                    ++ +++ +++++ +++ +F+ v+++ +    ++++ +++ ++++ +t++
     ah04488   217 PSYVISPvApedrisrkySFKAVHtGMraliynsstagsqaeqsgmrTYY 266  

                   lqAeseeereeWvealqsaiaka<-*
                   ++A+++e+++ Wv+a+++a++ +   
     ah04488   267 FSADTQEDMNAWVRAMNQAAQVL    289  

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