hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-22475930/chunk_1/iprscan-20080806-22475930.nocrc
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Query sequence: ah04519
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF00520.21.ls Ion transport protein                       482.2   5.7e-142   2
PF00520.21.fs Ion transport protein                       478.5   7.4e-141   2
PF08016.2.fs Polycystin cation channel                    20.3    3.4e-06   2

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
PF00520.21.fs   1/2     214   448 ..     1   224 []   235.6  9.6e-68
PF00520.21.ls   1/2     214   448 ..     1   224 []   237.5  2.7e-68
PF00520.21.fs   2/2     538   738 ..     1   224 []   242.9  6.4e-70
PF00520.21.ls   2/2     538   738 ..     1   224 []   244.7  1.8e-70

Alignments of top-scoring domains:
PF00520.21.fs: domain 1 of 2, from 214 to 448: score 235.6, E = 9.6e-68
                   *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl
                      +ldy+ft++Ft+Em++k+i lg+ lh   +++Y+r+ wNilDf+vv 
     ah04519   214    YLDYIFTGVFTFEMVIKMIDLGLLLH---PGAYFRDLWNILDFIVVS 257  

                   pslislilsllgggse.gdlyvreskdstlsegspgllsvlrllRllRvL
                   ++l+ +++s++ ggs ++d                  ++ +++lR+lRvL
     ah04519   258 GALVAFAFSSFVGGSKgKD------------------INTIKSLRVLRVL 289  

                   RllrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaii
                   R+l++i+r p+     l+ +    ++++slk+ ln+l++++l++fiFa+i
     ah04519   290 RPLKTIKRLPK-----LKAV--FDCVVNSLKNVLNILIVYMLFMFIFAVI 332  

                   gvqlFggklnkcc...........................npingntnFd
                   +vqlF+gk+++c +++++ + ++ +   + ++++ +  +  + ++++++d
     ah04519   333 AVQLFKGKFFYCTdeskelerdcrgqyldyekeeveaqprQWKKYDFHYD 382  

                   sfgnaflwlFqtmTteGwgdvmpdtl...........agtvlgyiyfvsf
                   ++++a+l+lF+++T+eGw+ v+ ++++ + +++++++++++   i++v++
     ah04519   383 NVLWALLTLFTVSTGEGWPMVLKHSVdatyeeqgpspGYRMELSIFYVVY 432  

                   iilgsflllNLfiavi<-*
                   ++++ f+++N+f+a+i   
     ah04519   433 FVVFPFFFVNIFVALI    448  

PF00520.21.ls: domain 1 of 2, from 214 to 448: score 237.5, E = 2.7e-68
                   *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl
                      +ldy+ft++Ft+Em++k+i lg+ lh   +++Y+r+ wNilDf+vv 
     ah04519   214    YLDYIFTGVFTFEMVIKMIDLGLLLH---PGAYFRDLWNILDFIVVS 257  

                   pslislilsllgggse.gdlyvreskdstlsegspgllsvlrllRllRvL
                   ++l+ +++s++ ggs ++d                  ++ +++lR+lRvL
     ah04519   258 GALVAFAFSSFVGGSKgKD------------------INTIKSLRVLRVL 289  

                   RllrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaii
                   R+l++i+r p+     l+ +    ++++slk+ ln+l++++l++fiFa+i
     ah04519   290 RPLKTIKRLPK-----LKAV--FDCVVNSLKNVLNILIVYMLFMFIFAVI 332  

                   gvqlFggklnkcc...........................npingntnFd
                   +vqlF+gk+++c +++++ + ++ +   + ++++ +  +  + ++++++d
     ah04519   333 AVQLFKGKFFYCTdeskelerdcrgqyldyekeeveaqprQWKKYDFHYD 382  

                   sfgnaflwlFqtmTteGwgdvmpdtl...........agtvlgyiyfvsf
                   ++++a+l+lF+++T+eGw+ v+ ++++ + +++++++++++   i++v++
     ah04519   383 NVLWALLTLFTVSTGEGWPMVLKHSVdatyeeqgpspGYRMELSIFYVVY 432  

                   iilgsflllNLfiavi<-*
                   ++++ f+++N+f+a+i   
     ah04519   433 FVVFPFFFVNIFVALI    448  

PF00520.21.fs: domain 2 of 2, from 538 to 738: score 242.9, E = 6.4e-70
                   *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl
                      +l++vft+ F +E++lkiia+g+       ++Y+r++wN++Df+ vl
     ah04519   538    CLNIVFTSMFSMECVLKIIAFGV-------LNYFRDAWNVFDFVTVL 577  

                   pslislilsllgggsegdlyvreskdstlsegspgllsvlrllRllRvLR
                   +s+ ++++++  +                   ++++ls+lrl+R+ R   
     ah04519   578 GSITDILVTEIAN-------------------NFINLSFLRLFRAAR--- 605  

                   llrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaiig
                   l++l+r+  +     +r+l  l+++++s+k+l +v+ll+++l+fi+aiig
     ah04519   606 LIKLLRQGYT-----IRIL--LWTFVQSFKALPYVCLLIAMLFFIYAIIG 648  

                   vqlFggklnkccnpingntnFdsfgnaflwlFqtmTteGwgdvmpdtl..
                   +q+Fg++  ++++ in+++nF++f++a++ lF+++T+e w ++m ++l++
     ah04519   649 MQVFGNIALDDDTSINRHNNFRTFLQALMLLFRSATGEAWHEIMLSCLsn 698  

                   ...........agtvlgyiyfvsfiilgsflllNLfiavi<-*
                   +  +++ + +++g++++y+yfvsfi+l+sfl+lNLf+avi   
     ah04519   699 qacdeqanateCGSDFAYFYFVSFIFLCSFLMLNLFVAVI    738  

PF00520.21.ls: domain 2 of 2, from 538 to 738: score 244.7, E = 1.8e-70
                   *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl
                      +l++vft+ F +E++lkiia+g+       ++Y+r++wN++Df+ vl
     ah04519   538    CLNIVFTSMFSMECVLKIIAFGV-------LNYFRDAWNVFDFVTVL 577  

                   pslislilsllgggsegdlyvreskdstlsegspgllsvlrllRllRvLR
                   +s+ ++++++  +                   ++++ls+lrl+R+ R   
     ah04519   578 GSITDILVTEIAN-------------------NFINLSFLRLFRAAR--- 605  

                   llrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaiig
                   l++l+r+  +     +r+l  l+++++s+k+l +v+ll+++l+fi+aiig
     ah04519   606 LIKLLRQGYT-----IRIL--LWTFVQSFKALPYVCLLIAMLFFIYAIIG 648  

                   vqlFggklnkccnpingntnFdsfgnaflwlFqtmTteGwgdvmpdtl..
                   +q+Fg++  ++++ in+++nF++f++a++ lF+++T+e w ++m ++l++
     ah04519   649 MQVFGNIALDDDTSINRHNNFRTFLQALMLLFRSATGEAWHEIMLSCLsn 698  

                   ...........agtvlgyiyfvsfiilgsflllNLfiavi<-*
                   +  +++ + +++g++++y+yfvsfi+l+sfl+lNLf+avi   
     ah04519   699 qacdeqanateCGSDFAYFYFVSFIFLCSFLMLNLFVAVI    738  

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