hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-23001017/chunk_1/iprscan-20080806-23001017.nocrc
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Query sequence: ah04629
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00727                                                  74.8    1.1e-17   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00727    1/3      88   116 ..     1    46 []    10.7      5.9
SM00727    2/3     118   157 ..     1    46 []    48.9  6.5e-10
SM00727    3/3     293   325 .]     1    46 []    15.1      1.6

Alignments of top-scoring domains:
SM00727: domain 1 of 3, from 88 to 116: score 10.7, E = 5.9
                   *->dPemaqllqsnPevrsllqdmqqNPdmlaqmmqsirqqNPelmqli<
                      +Pem+ ++++nP v+s+l+    NPd+++q++             + 
     ah04629    88    NPEMMVQIMENPFVQSMLS----NPDLMRQLI-------------M  116  

                   -*
                     
     ah04629     -    -    

SM00727: domain 2 of 3, from 118 to 157: score 48.9, E = 6.5e-10
                   *->dPemaqllqsnPevrsllqdmqqNPdmlaqmmqsirqqNPelmqli<
                      +P+m+ql+q+nPe +++l+    NPd+++q ++ +r  NP++mq++ 
     ah04629   118    NPQMQQLIQRNPEISHMLN----NPDIMRQTLELAR--NPAMMQEM  157  

                   -*
                     
     ah04629     -    -    

SM00727: domain 3 of 3, from 293 to 325: score 15.1, E = 1.6
                   *->dPemaqllqsnPevrsllqdmqqNPdmlaqmmqsirqqNPelmqli<
                      +P+++q+++s P++rs++q ++qNPd+ aq                 
     ah04629   293    NPQLMQNMLSAPYMRSMMQSLSQNPDLAAQVS-------------L  325  

                   -*
                     
     ah04629     -    -    

//