hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-23061187/chunk_1/iprscan-20080806-23061187.nocrc
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Query sequence: ah04724
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08516.2.fs ADAM cysteine-rich                              96.8    1.3e-26   1
PF08516.2.ls ADAM cysteine-rich                              61.1    3.4e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF08516.2.ls   1/1      16   112 ..     1   118 []    61.1  3.4e-15
PF08516.2.fs   1/1      19   112 ..    30   118 .]    96.8  1.3e-26

Alignments of top-scoring domains:
PF08516.2.ls: domain 1 of 1, from 16 to 112: score 61.1, E = 3.4e-15
                   *->DGtPCqnnqgYCYnGnCptrdqQCqelFGpgAkvApdsCYeelNskG
                           + +                     +g+ +Ap++C++ +Ns G
     ah04724    16    -----HAS---------------------SGSHPAPEACFQVVNSAG 36   

                   drfGNCGkesrngtyipCepqDvkCGkLqCtnvs.lpllgeh...atviy
                   d +GNCG++s  g ++pC+ +D++CGkLqC+++++ +l +++ + +++++
     ah04724    37 DAHGNCGQDS-EGHFLPCAGRDALCGKLQCQGGKpSLLAPHMvpvDSTVH 85   

                   tningvtCwgtdyhlgm..ddpDiGlV<-*
                   ++ ++vtC+g+ + ++ + d   +GlV   
     ah04724    86 LDGQEVTCRGALALPSAqlDLLGLGLV    112  

PF08516.2.fs: domain 1 of 1, from 19 to 112: score 96.8, E = 1.3e-26
                   *->pgAkvApdsCYeelNskGdrfGNCGkesrngtyipCepqDvkCGkLq
                      +g+ +Ap++C++ +Ns Gd +GNCG++s  g ++pC+ +D++CGkLq
     ah04724    19    SGSHPAPEACFQVVNSAGDAHGNCGQDS-EGHFLPCAGRDALCGKLQ 64   

                   Ctnvs.lpllgeh...atviytningvtCwgtdyhlgm..ddpDiGlV<-
                   C+++++ +l +++ + +++++++ ++vtC+g+ + ++ + d   +GlV  
     ah04724    65 CQGGKpSLLAPHMvpvDSTVHLDGQEVTCRGALALPSAqlDLLGLGLV   112  

                   *
                    
     ah04724     -   -    

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