hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-23061187/chunk_1/iprscan-20080806-23061187.nocrc
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Query sequence: ah04724
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00608                                                  85.0    9.2e-21   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00608    1/1      18   133 ..     1   152 []    85.0  9.2e-21

Alignments of top-scoring domains:
SM00608: domain 1 of 1, from 18 to 133: score 85.0, E = 9.2e-21
                   *->qDGtPCdngqgYCynGrCptrdqQCqalFGpgAkvApdsCYeevNsk
                                                    +g+++Ap++C++ vNs 
     ah04724    18    -----------------------------SSGSHPAPEACFQVVNSA 35   

                   GdrfGNCGrensangtyipCapeDvkCGkLqCtnvtelPllgehatviqs
                   Gd +GNCG++++  g+++pCa +D++CGkLqC++++  +l  +h++ + s
     ah04724    36 GDAHGNCGQDSE--GHFLPCAGRDALCGKLQCQGGKPSLLA-PHMVPVDS 82   

                   niggyiq..kgitCwgtdyhlgtdPvdltidpDpGlVkdGTkCGpgKVCi
                   +++    +++++tC+g+ + ++ +   l+    +GlV++GT CGp +VC+
     ah04724    83 TVH---LdgQEVTCRGALALPSAQ---LDL-LGLGLVEPGTQCGPRMVCN 125  

                   n.grCvdv<-*
                    ++ C+     
     ah04724   126 SnHNCHCA    133  

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