hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080806/iprscan-20080806-23121043/chunk_1/iprscan-20080806-23121043.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ah04823 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08337.2.ls Plexin cytoplasmic region 1140.0 0 1 PF08337.2.fs Plexin cytoplasmic region 1138.2 0 1 PF01437.15.fs Plexin repeat 110.1 2e-35 2 PF01437.15.ls Plexin repeat 113.5 5.5e-31 2 PF01833.14.fs IPT/TIG domain 86.9 1.9e-24 2 PF01833.14.ls IPT/TIG domain 88.6 1.8e-23 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01437.15.fs 1/2 97 150 .. 1 63 [] 74.4 9.7e-24 PF01437.15.ls 1/2 97 150 .. 1 63 [] 76.2 9.7e-20 PF01437.15.ls 2/2 234 278 .. 1 63 [] 37.4 4.7e-08 PF01437.15.fs 2/2 234 278 .. 1 63 [] 35.7 4.3e-11 PF01833.14.ls 1/2 307 393 .. 1 104 [] 44.6 3.1e-10 PF01833.14.fs 1/2 307 393 .. 3 104 .] 44.7 2.9e-12 PF01833.14.ls 2/2 397 483 .. 1 104 [] 44.0 4.7e-10 PF01833.14.fs 2/2 397 483 .. 1 104 [] 42.2 1.5e-11 PF08337.2.fs 1/1 654 1178 .. 1 586 [] 1138.2 0 PF08337.2.ls 1/1 654 1178 .. 1 586 [] 1140.0 0 Alignments of top-scoring domains: PF01437.15.fs: domain 1 of 2, from 97 to 150: score 74.4, E = 9.7e-24 *->nCsqytsCssCLaardpfyCgWCssegrCtrgsaytsfygeCprse. nC ++sCs+CL a dp +CgWC+s++rCt ++ +C +se+ ah04823 97 NCNKHKSCSECLTATDP-HCGWCHSLQRCTFQG-------DCVHSEn 135 pendqwldwswssskCp<-* e +wld+s+ +kCp ah04823 136 LE--NWLDISSGAKKCP 150 PF01437.15.ls: domain 1 of 2, from 97 to 150: score 76.2, E = 9.7e-20 *->nCsqytsCssCLaardpfyCgWCssegrCtrgsaytsfygeCprse. nC ++sCs+CL a dp +CgWC+s++rCt ++ +C +se+ ah04823 97 NCNKHKSCSECLTATDP-HCGWCHSLQRCTFQG-------DCVHSEn 135 pendqwldwswssskCp<-* e +wld+s+ +kCp ah04823 136 LE--NWLDISSGAKKCP 150 PF01437.15.ls: domain 2 of 2, from 234 to 278: score 37.4, E = 4.7e-08 *->nCsqytsCssCLaardpfyCgWCssegrCtrgsaytsfygeCprse. nCs ++ C +C++ +C+WC+s +rC++ ++ C++s+ ah04823 234 NCSSLKECPACVET----GCAWCKSARRCIHPFT------ACDPSDy 270 pendqwldwswssskCp<-* ++ +++Cp ah04823 271 ER---------NQEQCP 278 PF01437.15.fs: domain 2 of 2, from 234 to 278: score 35.7, E = 4.3e-11 *->nCsqytsCssCLaardpfyCgWCssegrCtrgsaytsfygeCprse. nCs ++ C +C++ +C+WC+s +rC++ ++ C++s+ ah04823 234 NCSSLKECPACVET----GCAWCKSARRCIHPFT------ACDPSDy 270 pendqwldwswssskCp<-* ++ +++Cp ah04823 271 ER---------NQEQCP 278 PF01833.14.ls: domain 1 of 2, from 307 to 393: score 44.6, E = 3.1e-10 *->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt I si+P + ++ G +++++tG n++ +s + ++++ ah04823 307 --IKSIEPQRVSTLGKSNVIVTGANFTRAS-----------NITMIL 340 fggtpvpCdvisssss.....tqivCktPpva.ggpsppvvtvsvdgggs g+ + Cd ++ + s+ ++t++ + +P++++++++ v +++dgg+ ah04823 341 KGTST--CDKDVIQVShvlndTHMKFSLPSSRkEMKD---VCIQFDGGN- 384 gdgrssspvtFtY<-* +ss ++ +Y ah04823 385 ----CSSVGSLSY 393 PF01833.14.fs: domain 1 of 2, from 307 to 393: score 44.7, E = 2.9e-12 *->ItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVtfg I si+P + ++ G +++++tG n++ +s + ++++ g ah04823 307 IKSIEPQRVSTLGKSNVIVTGANFTRAS-----------NITMILKG 342 gtpvpCdvisssss.....tqivCktPpva.ggpsppvvtvsvdgggsgd + + Cd ++ + s+ ++t++ + +P++++++++ v +++dgg+ ah04823 343 TST--CDKDVIQVShvlndTHMKFSLPSSRkEMKD---VCIQFDGGN--- 384 grssspvtFtY<-* +ss ++ +Y ah04823 385 --CSSVGSLSY 393 PF01833.14.ls: domain 2 of 2, from 397 to 483: score 44.0, E = 4.7e-10 *->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt P+ + i+P + ++sGG +iT+ G+n++ i + ah04823 397 PHCSLIFPATTWISGGQNITMMGRNFD---------------VIDNL 428 fggtpvpCdvissssstqivCktPpva.ggpsppv...vtvsvdgggsgd + +++ + ++++s+++ + +++ +a+ +s +v+++vtv++ +++ ah04823 429 IISHELKGNINVSEYC--VATYCGFLApSLKSSKVrtnVTVKLRVQD--- 473 grssspvtFtY<-* ++ +t +Y ah04823 474 -TYLDCGTLQY 483 PF01833.14.fs: domain 2 of 2, from 397 to 483: score 42.2, E = 1.5e-11 *->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt P+ + i+P + ++sGG +iT+ G+n++ i + ah04823 397 PHCSLIFPATTWISGGQNITMMGRNFD---------------VIDNL 428 fggtpvpCdvissssstqivCktPpva.ggpsppv...vtvsvdgggsgd + +++ + ++++s+++ + +++ +a+ +s +v+++vtv++ +++ ah04823 429 IISHELKGNINVSEYC--VATYCGFLApSLKSSKVrtnVTVKLRVQD--- 473 grssspvtFtY<-* ++ +t +Y ah04823 474 -TYLDCGTLQY 483 PF08337.2.fs: domain 1 of 1, from 654 to 1178: score 1138.2, E = 0 *->sGiPfLDYktYaeRvFFpkpGhedHPvLkdlevpesraptveegLtq +++PfLDYk++a R+FFp++G+++H++++d++ +++a++++e+Lt+ ah04823 654 GTVPFLDYKHFALRTFFPESGGFTHIFTEDMH--NRDANDKNESLTA 698 FsqLLnNKsFLltfIhTLEsQrsFSvRDRvnvASLLmvaLqgKLeYcTdI +++L++NKsFL+t+IhTLE+Q++FSv+DR+++AS+L++aLq+KL+Y+T+I ah04823 699 LDALICNKSFLVTVIHTLEKQKNFSVKDRCLFASFLTIALQTKLVYLTSI 748 LktLLrdLIeksvesKnnPKLmLRRTESVVEKMLTNWmSiCLYdfLKeta L++L+rdL+e++ s+++PKLmLRRTESVVEK+LTNWmS+CL++fL+et+ ah04823 749 LEVLTRDLMEQC--SNMQPKLMLRRTESVVEKLLTNWMSVCLSGFLRETV 796 GepLflLfkAIKqQieKGPVDAvTgkARYTLnEekLLReqveykpltlnC Gep++lL+++++q+i+KGPVD++T+kA YTLnE++LL++++e+++++ln ah04823 797 GEPFYLLVTTLNQKINKGPVDVITCKALYTLNEDWLLWQVPEFSTVALN- 845 VilevqpegdeadgvrnvpVkVLDCDTItQVKeKiLdavY..kgtPySqR V++e++pe+++ad++rn++V+VLDCDTI+Q+KeKi++a+++++g+Py++ ah04823 846 VVFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAFLskNGSPYGL- 894 PrvedldLEWrtGrrghliLqDveDvTskiegglwKRLNTLaHYgVpDGA ++++++LE ++G+r++++L++ +++++++e+g +++LNT++HY++++G+ ah04823 895 -QLNEIGLELQMGTRQKELLDI-DSSSVILEDG-ITKLNTIGHYEISNGS 941 tlaLvpkqntassynisilStksekstsiltdnssryestlrldssddsl t+++++k+ ++++++ +++sdd++ ah04823 942 TIKVFKKI---ANFTSD-------------------------VEYSDDHC 963 gsrsdlledgqesGvklwHLVkPtdelveqkkgkRqslklkeredrkKai HL++P++e++++++gkR+++k +k+++ ah04823 964 ------------------HLILPDSEAFQDVQGKRHRGK------HKFKV 989 pEIYLTRLLstKGTLQKFVDDLFesILStaHrnsalPlAvKYfFDFLDeq +E+YLT+LLstK+++++++++LF+sI+S+ +ns++P+A+KYfFDFLD+q ah04823 990 KEMYLTKLLSTKVAIHSVLEKLFRSIWSL--PNSRAPFAIKYFFDFLDAQ 1037 AekhgIsDpDvvHiWKsNsLPLRFWVNiiKNPqFVFDIhKtdsvDAcLSV Ae+++I+DpDvvHiWK+NsLPLRFWVNi+KNPqFVFDI+Kt+++D+cLSV ah04823 1038 AENKKITDPDVVHIWKTNSLPLRFWVNILKNPQFVFDIKKTPHIDGCLSV 1087 iAQTFMDACStsEhrLGKDSPSNKLLYAKDIPrYkkmVerYYkdIrdmpp iAQ+FMDA+S++E++LGK++P+NKLLYAKDIP+Yk++V++YYk+Ird+pp ah04823 1088 IAQAFMDAFSLTEQQLGKEAPTNKLLYAKDIPTYKEEVKSYYKAIRDLPP 1137 iSdQEMnaaLaeeSrkhsnefntlvALnELYkYvkKYrdqI<-* +S++EM+++L++eS+kh+nefn++vAL+E+YkY++KY+d+I ah04823 1138 LSSSEMEEFLTQESKKHENEFNEEVALTEIYKYIVKYFDEI 1178 PF08337.2.ls: domain 1 of 1, from 654 to 1178: score 1140.0, E = 0 *->sGiPfLDYktYaeRvFFpkpGhedHPvLkdlevpesraptveegLtq +++PfLDYk++a R+FFp++G+++H++++d++ +++a++++e+Lt+ ah04823 654 GTVPFLDYKHFALRTFFPESGGFTHIFTEDMH--NRDANDKNESLTA 698 FsqLLnNKsFLltfIhTLEsQrsFSvRDRvnvASLLmvaLqgKLeYcTdI +++L++NKsFL+t+IhTLE+Q++FSv+DR+++AS+L++aLq+KL+Y+T+I ah04823 699 LDALICNKSFLVTVIHTLEKQKNFSVKDRCLFASFLTIALQTKLVYLTSI 748 LktLLrdLIeksvesKnnPKLmLRRTESVVEKMLTNWmSiCLYdfLKeta L++L+rdL+e++ s+++PKLmLRRTESVVEK+LTNWmS+CL++fL+et+ ah04823 749 LEVLTRDLMEQC--SNMQPKLMLRRTESVVEKLLTNWMSVCLSGFLRETV 796 GepLflLfkAIKqQieKGPVDAvTgkARYTLnEekLLReqveykpltlnC Gep++lL+++++q+i+KGPVD++T+kA YTLnE++LL++++e+++++ln ah04823 797 GEPFYLLVTTLNQKINKGPVDVITCKALYTLNEDWLLWQVPEFSTVALN- 845 VilevqpegdeadgvrnvpVkVLDCDTItQVKeKiLdavY..kgtPySqR V++e++pe+++ad++rn++V+VLDCDTI+Q+KeKi++a+++++g+Py++ ah04823 846 VVFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAFLskNGSPYGL- 894 PrvedldLEWrtGrrghliLqDveDvTskiegglwKRLNTLaHYgVpDGA ++++++LE ++G+r++++L++ +++++++e+g +++LNT++HY++++G+ ah04823 895 -QLNEIGLELQMGTRQKELLDI-DSSSVILEDG-ITKLNTIGHYEISNGS 941 tlaLvpkqntassynisilStksekstsiltdnssryestlrldssddsl t+++++k+ ++++++ +++sdd++ ah04823 942 TIKVFKKI---ANFTSD-------------------------VEYSDDHC 963 gsrsdlledgqesGvklwHLVkPtdelveqkkgkRqslklkeredrkKai HL++P++e++++++gkR+++k +k+++ ah04823 964 ------------------HLILPDSEAFQDVQGKRHRGK------HKFKV 989 pEIYLTRLLstKGTLQKFVDDLFesILStaHrnsalPlAvKYfFDFLDeq +E+YLT+LLstK+++++++++LF+sI+S+ +ns++P+A+KYfFDFLD+q ah04823 990 KEMYLTKLLSTKVAIHSVLEKLFRSIWSL--PNSRAPFAIKYFFDFLDAQ 1037 AekhgIsDpDvvHiWKsNsLPLRFWVNiiKNPqFVFDIhKtdsvDAcLSV Ae+++I+DpDvvHiWK+NsLPLRFWVNi+KNPqFVFDI+Kt+++D+cLSV ah04823 1038 AENKKITDPDVVHIWKTNSLPLRFWVNILKNPQFVFDIKKTPHIDGCLSV 1087 iAQTFMDACStsEhrLGKDSPSNKLLYAKDIPrYkkmVerYYkdIrdmpp iAQ+FMDA+S++E++LGK++P+NKLLYAKDIP+Yk++V++YYk+Ird+pp ah04823 1088 IAQAFMDAFSLTEQQLGKEAPTNKLLYAKDIPTYKEEVKSYYKAIRDLPP 1137 iSdQEMnaaLaeeSrkhsnefntlvALnELYkYvkKYrdqI<-* +S++EM+++L++eS+kh+nefn++vAL+E+YkY++KY+d+I ah04823 1138 LSSSEMEEFLTQESKKHENEFNEEVALTEIYKYIVKYFDEI 1178 //