hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-23121043/chunk_1/iprscan-20080806-23121043.nocrc
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Query sequence: ah04823
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00423                                                 100.8    1.5e-25   2
SM00429                                                  70.5    2.1e-16   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00423    1/2      97   150 ..     1    56 []    64.8  1.1e-14
SM00423    2/2     234   278 ..     1    56 []    36.0    5e-06
SM00429    1/2     396   484 ..     1   111 []    37.2  2.2e-06
SM00429    2/2     486   591 ..     1   111 []    33.3  3.4e-05

Alignments of top-scoring domains:
SM00423: domain 1 of 2, from 97 to 150: score 64.8, E = 1.1e-14
                   *->rCsqygvtsCseCllardpygCgWCssegrCtrgerCderrgsrqnw
                      +C+++  +sCseCl a dp+ CgWC+s +rCt +++C  +++ ++nw
     ah04823    97    NCNKH--KSCSECLTATDPH-CGWCHSLQRCTFQGDCVHSEN-LENW 139  

                   ssg..pssqCp<-*
                   +++++++++Cp   
     ah04823   140 LDIssGAKKCP    150  

SM00423: domain 2 of 2, from 234 to 278: score 36.0, E = 5e-06
                   *->rCsqygvtsCseCllardpygCgWCssegrCtrg.erCderrgsrqn
                      +Cs +  + C +C++ +    C+WC+s +rC+++  +Cd+     ++
     ah04823   234    NCSSL--KECPACVETG----CAWCKSARRCIHPfTACDP-----SD 269  

                   wssgpssqCp<-*
                   +++  ++qCp   
     ah04823   270 YER-NQEQCP    278  

SM00429: domain 1 of 2, from 396 to 484: score 37.2, E = 2.2e-06
                   *->dPvItrisPssGplsGGteritlcGknLdsdgsvvfvrvgvgGr.vW
                      +P+ + i+P + ++sGG   it+ G+n+d+ ++   +++++ G+  +
     ah04823   396    LPHCSLIFPATTWISGGQ-NITMMGRNFDV-IDNLIISHELKGNiNV 440  

                   evpCtflpsdvhGkdsstaivCrtPpylnqspgpgsvpvrvtgevgfdng
                   +++C  +              C   + + +s + +  +v    +v+++  
     ah04823   441 SEYCVAT-------------YCGFLAPSLKS-SKVRTNV----TVKLRVQ 472  

                   gvrtelsppspFtYv<-*
                   +++ +   + +++Y+   
     ah04823   473 DTYLD---CGTLQYR    484  

SM00429: domain 2 of 2, from 486 to 591: score 33.3, E = 3.4e-05
                   *->dPvItrisPssGplsGGteritlcGknLds..dgsvvfvrvgvgGrv
                      dP++t +  +s      +  i  +  n++ +++  +++ ++g++G  
     ah04823   486    DPRFTGYRVESEVDTELEVKIQKENDNFNIskKDIEITLFHGENG-- 530  

                   WevpCtflpsdvhGkdsstaivCrtPpylnqsp.gpgsvpvrvtgevgfd
                    + +C+f++   +  ++ t+i+C++  + ++s+  ++s +v    +v+++
     ah04823   531 -QLNCSFENITRN--QDLTTILCKIKGIKTASTiANSSKKV----RVKLG 573  

                   nggvrtel.sppspFtYv<-*
                   n + ++e++s ps+++++   
     ah04823   574 NLELYVEQeSVPSTWYFL    591  

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