hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-23241469/chunk_1/iprscan-20080806-23241469.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: ah04962
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00027                                                 151.7    7.6e-41   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00027    1/1     182   277 ..     1    98 []   151.7  7.6e-41

Alignments of top-scoring domains:
SM00027: domain 1 of 1, from 182 to 277: score 151.7, E = 7.6e-41
                   *->eWaispedkakYdqiFrsldpdqdGtvsGaqakpiflkSgLPqtlLa
                      +W i+ e++++Y ++Frsl+pd + ++sG++ak++f kS+L+ ++L+
     ah04962   182    PWRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELS 228  

                   kIWaLaDidkdGeLdrePEFalAmhLiyrklnGgepiPasLPpelippsk
                   +IW+L+D d+dG L+++ EF++A+hLi   +nG +p+P  LPp l+p+++
     ah04962   229 YIWELSDADCDGALTLP-EFCAAFHLIVARKNG-YPLPEGLPPTLQPEYL 276  

                   r<-*
                   +   
     ah04962   277 Q    277  

//