hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-23361050/chunk_1/iprscan-20080806-23361050.nocrc
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Query sequence: ah05123
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01619.8.fs Proline dehydrogenase                          439.7   3.6e-129   1
PF01619.8.ls Proline dehydrogenase                          337.7    1.8e-98   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01619.8.ls   1/1       3   266 ..     1   379 []   337.7  1.8e-98
PF01619.8.fs   1/1      16   266 ..   106   379 .]   439.7 3.6e-129

Alignments of top-scoring domains:
PF01619.8.ls: domain 1 of 1, from 3 to 266: score 337.7, E = 1.8e-98
                   *->llgtvflfltalGrpllklavseamrlmgrqfvtGetiqqaiktvkr
                        g++f      +                             + + +
     ah05123     3    PQGGTF------P-----------------------------PLLWP 14   

                   leelisegfilsvdmLGvadrkevkEavltaadAaayveaylqaihaigk
                   ++                                            ++ +
     ah05123    15 DR--------------------------------------------VLHP 20   

                   asklskifsvPgistklseLslkysEPEPLsleeerfelvmeellprlre
                   ++               +e++l+++     ++eee+   +m+++l+r++ 
     ah05123    21 QTGQ-------------LEPLLSRF-----TEEEEL---QMTRMLQRMDV 49   

                   laekAqelgvavtiDaEetdrleliDYmYldifkelmfdpenkgregvgn
                   la+kA+e+gv++++DaE+t+++++i    +++++e m++++n++++ ++n
     ah05123    50 LAKKATEMGVRLMVDAEQTYFQPAI----SRLTLE-MQRKFNVEKPLIFN 94   

                   viQAYLrragedidalvalAkregrklgvRLVKGAYwdsErkRAqvkGye
                   ++Q+YL++a+++++++v+lA+reg+++g++LV+GAY  +Er+RA+++Gye
     ah05123    95 TYQCYLKDAYDNVTLDVELARREGWCFGAKLVRGAYLAQERARAAEIGYE 144  

                   dppvftdkattdmnyqcllrlllegrdykkiypmvAsHNadtvafvlqla
                   dp+++t++at+ m+++cl+++l+e+++++k ++mvAsHN+dtv+f+l+++
     ah05123   145 DPINPTYEATNAMYHRCLDYVLEELKHNAKAKVMVASHNEDTVRFALRRM 194  

                   kelgiskadgqfeFqqLyGMgdqlsfeLvkagaDiGKLaynvrkYaPyGp
                   +elg ++ad+q++F+qL+GM+dq+sf+L++ag       y+v+kY+PyGp
     ah05123   195 EELGLHPADHQVYFGQLLGMCDQISFPLGQAG-------YPVYKYVPYGP 237  

                   vAHFeellaYLvRRLlENganssFvnkerdlk<-*
                   v   +e+l+YL+RR+lEN++ ++ +++er+l+   
     ah05123   238 V---MEVLPYLSRRALENSSFMKGTHRERQLL    266  

PF01619.8.fs: domain 1 of 1, from 16 to 266: score 439.7, E = 3.6e-129
                   *->svPgistklseLslkysEPEPLsleeerfelvmeellprlrelaekA
                      +v  ++t+++e++l+++     ++eee+   +m+++l+r++ la+kA
     ah05123    16    RVLHPQTGQLEPLLSRF-----TEEEEL---QMTRMLQRMDVLAKKA 54   

                   qelgvavtiDaEetdrleliDYmYldifkelmfdpenkgregvgnviQAY
                   +e+gv++++DaE+t+++++i    +++++e m++++n++++ ++n++Q+Y
     ah05123    55 TEMGVRLMVDAEQTYFQPAI----SRLTLE-MQRKFNVEKPLIFNTYQCY 99   

                   LrragedidalvalAkregrklgvRLVKGAYwdsErkRAqvkGyedppvf
                   L++a+++++++v+lA+reg+++g++LV+GAY  +Er+RA+++Gyedp+++
     ah05123   100 LKDAYDNVTLDVELARREGWCFGAKLVRGAYLAQERARAAEIGYEDPINP 149  

                   tdkattdmnyqcllrlllegrdykkiypmvAsHNadtvafvlqlakelgi
                   t++at+ m+++cl+++l+e+++++k ++mvAsHN+dtv+f+l++++elg 
     ah05123   150 TYEATNAMYHRCLDYVLEELKHNAKAKVMVASHNEDTVRFALRRMEELGL 199  

                   skadgqfeFqqLyGMgdqlsfeLvkagaDiGKLaynvrkYaPyGpvAHFe
                   ++ad+q++F+qL+GM+dq+sf+L++ag       y+v+kY+PyGpv   +
     ah05123   200 HPADHQVYFGQLLGMCDQISFPLGQAG-------YPVYKYVPYGPV---M 239  

                   ellaYLvRRLlENganssFvnkerdlk<-*
                   e+l+YL+RR+lEN++ ++ +++er+l+   
     ah05123   240 EVLPYLSRRALENSSFMKGTHRERQLL    266  

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