hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080806/iprscan-20080806-23420077/chunk_1/iprscan-20080806-23420077.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ah05148 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00620.17.fs RhoGAP domain 221.0 6.5e-65 1 PF00620.17.ls RhoGAP domain 222.9 6.5e-64 1 PF00169.19.fs PH domain 181.6 8.4e-55 5 PF00169.19.ls PH domain 180.0 5.5e-51 5 PF01412.9.fs Putative GTPase activating protein for Arf 106.6 2.4e-30 1 PF01412.9.ls Putative GTPase activating protein for Arf 107.6 3.3e-29 1 PF00788.13.ls Ras association (RalGDS/AF-6) domain 64.7 2.7e-16 1 PF00788.13.fs Ras association (RalGDS/AF-6) domain 62.8 5.5e-16 1 PF00536.20.fs SAM domain (Sterile alpha motif) 48.3 1.4e-13 1 PF00536.20.ls SAM domain (Sterile alpha motif) 50.3 6.1e-12 1 PF07647.7.fs SAM domain (Sterile alpha motif) 41.3 1.8e-11 1 PF07647.7.ls SAM domain (Sterile alpha motif) 41.3 3e-09 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07647.7.ls 1/1 38 105 .. 1 72 [] 41.3 3e-09 PF00536.20.fs 1/1 39 103 .. 1 65 [] 48.3 1.4e-13 PF00536.20.ls 1/1 39 103 .. 1 65 [] 50.3 6.1e-12 PF07647.7.fs 1/1 45 105 .. 8 72 .] 41.3 1.8e-11 PF00169.19.fs 1/5 363 454 .. 1 92 [] 60.9 4.3e-18 PF00169.19.ls 1/5 363 454 .. 1 92 [] 62.9 9.5e-16 PF01412.9.fs 1/1 570 658 .. 1 94 [. 106.6 2.4e-30 PF01412.9.ls 1/1 570 694 .. 1 137 [] 107.6 3.3e-29 PF00169.19.ls 3/5 779 885 .. 1 92 [] 52.2 1.6e-12 PF00169.19.fs 3/5 779 885 .. 1 92 [] 50.2 8e-15 PF00620.17.ls 1/1 1006 1155 .. 1 155 [] 222.9 6.5e-64 PF00620.17.fs 1/1 1006 1155 .. 1 155 [] 221.0 6.5e-65 PF00788.13.fs 1/1 1207 1296 .. 1 97 [] 62.8 5.5e-16 PF00788.13.ls 1/1 1207 1296 .. 1 97 [] 64.7 2.7e-16 PF00169.19.fs 5/5 1310 1420 .. 1 92 [] 49.7 1.1e-14 PF00169.19.ls 5/5 1310 1420 .. 1 92 [] 51.7 2.2e-12 Alignments of top-scoring domains: PF07647.7.ls: domain 1 of 1, from 38 to 105: score 41.3, E = 3e-09 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa + ++ svaeWL++++l +qY+ F+++g+ + ++l+ L ah05148 38 EAGDAALSVAEWLRALHL-EQYTGLFEQHGLVWATEC-QGLSDTRL- 81 klalGitsvghRkkilkkiqelkqq<-* + ++G+ ++ghR++il ++ + ++ ah05148 82 M-DMGMLLPGHRRRILAGLLRAHTS 105 PF00536.20.fs: domain 1 of 1, from 39 to 103: score 48.3, E = 1.4e-13 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG g sV+eWL++++l+qY+ F ++g++ + l++ L+d+G ah05148 39 AGDAALSVAEWLRALHLEQYTGLFEQHGLVWATECQGLSDTRLMDMG 85 vtllGHrkKIlssIqgLk<-* + l+GHr +Il + + + ah05148 86 MLLPGHRRRILAGLLRAH 103 PF00536.20.ls: domain 1 of 1, from 39 to 103: score 50.3, E = 6.1e-12 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG g sV+eWL++++l+qY+ F ++g++ + l++ L+d+G ah05148 39 AGDAALSVAEWLRALHLEQYTGLFEQHGLVWATECQGLSDTRLMDMG 85 vtllGHrkKIlssIqgLk<-* + l+GHr +Il + + + ah05148 86 MLLPGHRRRILAGLLRAH 103 PF07647.7.fs: domain 1 of 1, from 45 to 105: score 41.3, E = 1.8e-11 *->svaeWLesiglegqYkdnFsdqgitglellllrlteedLaklalGit svaeWL++++l +qY+ F+++g+ + ++l+ L + ++G+ ah05148 45 SVAEWLRALHL-EQYTGLFEQHGLVWATEC-QGLSDTRL-M-DMGML 87 svghRkkilkkiqelkqq<-* ++ghR++il ++ + ++ ah05148 88 LPGHRRRILAGLLRAHTS 105 PF00169.19.fs: domain 1 of 5, from 363 to 454: score 60.9, E = 4.3e-18 *->vikeGwLlkkg..gkkswkkRyfvLfddvLlyykdkk.kkpkgsipL vik GwL k ++g ++kR++ L +d+L y+++ k++ k+ i++ ah05148 363 VIKAGWLDKNPpqGSYIYQKRWVRLDTDHLRYFDSNKdAYSKRFISV 409 sgiqvtkvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsair< i+ + + + Fe++t++r t+ ++aes+ erkeW++a+q+a++ ah05148 410 ACISHVAAIG---DQKFEVITnNR-TFAFRAESDVERKEWMQALQQAMA 454 -* ah05148 - - PF00169.19.ls: domain 1 of 5, from 363 to 454: score 62.9, E = 9.5e-16 *->vikeGwLlkkg..gkkswkkRyfvLfddvLlyykdkk.kkpkgsipL vik GwL k ++g ++kR++ L +d+L y+++ k++ k+ i++ ah05148 363 VIKAGWLDKNPpqGSYIYQKRWVRLDTDHLRYFDSNKdAYSKRFISV 409 sgiqvtkvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsair< i+ + + + Fe++t++r t+ ++aes+ erkeW++a+q+a++ ah05148 410 ACISHVAAIG---DQKFEVITnNR-TFAFRAESDVERKEWMQALQQAMA 454 -* ah05148 - - PF01412.9.fs: domain 1 of 1, from 570 to 658: score 106.6, E = 2.4e-30 *->qrvlqlLrsldpgNkkCfDCgavpnPtWaSvnlGvflCieCSGiHRn +v +++ + N+ C+DCga p P+WaS+nl v++C +C+G HR+ ah05148 570 SEVAERIWAAA-PNRFCADCGA-PQPDWASINLCVVICKRCAGEHRG 614 LfGvHiSkVnvRSltLD..sWtpeelrklesckgGNenansfwEsnldd< L G +SkV RSl++D++ Wt++ ++++ +GN + n+fw +n+++ ah05148 615 L-GAGVSKV--RSLKMDrkVWTETLIELFL--QLGNGAGNRFWAANVPP 658 -* ah05148 - - PF01412.9.ls: domain 1 of 1, from 570 to 694: score 107.6, E = 3.3e-29 *->qrvlqlLrsldpgNkkCfDCgavpnPtWaSvnlGvflCieCSGiHRn +v +++ + N+ C+DCga p P+WaS+nl v++C +C+G HR+ ah05148 570 SEVAERIWAAA-PNRFCADCGA-PQPDWASINLCVVICKRCAGEHRG 614 LfGvHiSkVnvRSltLD..sWtpeelrklesckgGNenansfwEsnlddf L G +SkV RSl++D++ Wt++ ++++ +GN + n+fw +n+++ ah05148 615 L-GAGVSKV--RSLKMDrkVWTETLIELFL--QLGNGAGNRFWAANVPPS 659 slkpkdsdaaavKCqddrqkyesfiaaKYeeklf..vlkeeqee<-* + + s+ ++ + aKY+e ++++++++ ah05148 660 EALQPSSS---------PSTRRCHLEAKYREGKYrrYHPLFGNQ 694 PF00169.19.ls: domain 3 of 5, from 779 to 885: score 52.2, E = 1.6e-12 *->vikeGwLlkkg..........gkkswkkRyfvLfddvLlyykdkk.k v ++G+L+k + ++ +++++++++ +R++vL d+vL+y++++ ah05148 779 VSHSGFLYKTAsagkllqdrrAREEFSRRWCVLGDGVLSYFENERaV 825 kpkgsipLsgiqvtkvpdn...krkncFeirt.dretlllqaeseeerke +p g i s+i + vp++++++ +++Fe+ t++++ +l+ es+e+++e ah05148 826 TPNGEIRASEIVCLAVPPPdthGFEHTFEVYTeGERLYLFGLESAEQAHE 875 Wvkaiqsair<-* Wvk+i +a ah05148 876 WVKCIAKAFV 885 PF00169.19.fs: domain 3 of 5, from 779 to 885: score 50.2, E = 8e-15 *->vikeGwLlkkg..........gkkswkkRyfvLfddvLlyykdkk.k v ++G+L+k + ++ +++++++++ +R++vL d+vL+y++++ ah05148 779 VSHSGFLYKTAsagkllqdrrAREEFSRRWCVLGDGVLSYFENERaV 825 kpkgsipLsgiqvtkvpdn...krkncFeirt.dretlllqaeseeerke +p g i s+i + vp++++++ +++Fe+ t++++ +l+ es+e+++e ah05148 826 TPNGEIRASEIVCLAVPPPdthGFEHTFEVYTeGERLYLFGLESAEQAHE 875 Wvkaiqsair<-* Wvk+i +a ah05148 876 WVKCIAKAFV 885 PF00620.17.ls: domain 1 of 1, from 1006 to 1155: score 222.9, E = 6.5e-64 *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln P iv++C++++ + GL++EGIyR++G +s+ ++L e ++++++ +++ ah05148 1006 PVIVYRCVDYITQCGLTSEGIYRKCGQTSKTQRLLESLRQDARSVHL 1052 dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea ++e+ v +v+s+LK+FLR+LP++L+t++ +++e a ++edeee++++ ah05148 1053 KEGEQHVDDVSSALKRFLRDLPDGLFTRAERLTWLE-ASEIEDEEEKVSR 1101 lrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLlr +rell LPp+Nr+t ++L+ hL+ V+++s+ N+M++hNLAivFgPtL++ ah05148 1102 YRELLVRLPPVNRATVKALISHLYCVQCFSDTNQMNVHNLAIVFGPTLFQ 1151 ppdgdsad<-* + ++ ah05148 1152 T----DGQ 1155 PF00620.17.fs: domain 1 of 1, from 1006 to 1155: score 221.0, E = 6.5e-65 *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln P iv++C++++ + GL++EGIyR++G +s+ ++L e ++++++ +++ ah05148 1006 PVIVYRCVDYITQCGLTSEGIYRKCGQTSKTQRLLESLRQDARSVHL 1052 dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea ++e+ v +v+s+LK+FLR+LP++L+t++ +++e a ++edeee++++ ah05148 1053 KEGEQHVDDVSSALKRFLRDLPDGLFTRAERLTWLE-ASEIEDEEEKVSR 1101 lrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLlr +rell LPp+Nr+t ++L+ hL+ V+++s+ N+M++hNLAivFgPtL++ ah05148 1102 YRELLVRLPPVNRATVKALISHLYCVQCFSDTNQMNVHNLAIVFGPTLFQ 1151 ppdgdsad<-* + ++ ah05148 1152 T----DGQ 1155 PF00788.13.fs: domain 1 of 1, from 1207 to 1296: score 62.8, E = 5.5e-16 *->dsgvlrVygedgtpgtyktilvskntTaeeViralLrKfgldaddpe +++++ Vy+e +++t +i+v+ ++Taee+ ++L+++++ + ++ ah05148 1207 GDFICTVYLEEKKAETEQHIKVPASMTAEELTLEILDRRNVGIREKD 1253 dyvLvEvslvlerggeerrvLpddEkPlqiqlqlkrdaqrsrFlLrrred ++ ++E v er++ er +L+ Ek+l i+ l++ +s+++++++++ ah05148 1254 YWTCFE---VNEREEAER-PLHFAEKVLPILHGLGT---DSHLVVKKHQA 1296 <-* ah05148 - - PF00788.13.ls: domain 1 of 1, from 1207 to 1296: score 64.7, E = 2.7e-16 *->dsgvlrVygedgtpgtyktilvskntTaeeViralLrKfgldaddpe +++++ Vy+e +++t +i+v+ ++Taee+ ++L+++++ + ++ ah05148 1207 GDFICTVYLEEKKAETEQHIKVPASMTAEELTLEILDRRNVGIREKD 1253 dyvLvEvslvlerggeerrvLpddEkPlqiqlqlkrdaqrsrFlLrrred ++ ++E v er++ er +L+ Ek+l i+ l++ +s+++++++++ ah05148 1254 YWTCFE---VNEREEAER-PLHFAEKVLPILHGLGT---DSHLVVKKHQA 1296 <-* ah05148 - - PF00169.19.fs: domain 5 of 5, from 1310 to 1420: score 49.7, E = 1.1e-14 *->vikeGwLlkkg.........gkkswkkRyfvLfddvLlyykdkk.kk +k+G ++ +++++ + + +++++Ryf+L +++L +yk+ +++ ah05148 1310 DTKHGMMKFREdrsllglglPSGGFHDRYFILNSSCLRLYKEVRsHR 1356 pkgsipLsgiqvtkvpdn....krkncFeirt.dr....etlllqaesee p + +p+++++v+ ++ + +++ +F ++++++++++++++l+++++ ah05148 1357 PEKEWPIKSLKVYLGVKKklrpPTCWGFTVVHeTEkhekQQWYLCCDTQM 1406 erkeWvkaiqsair<-* e++eW + + +++ ah05148 1407 ELREWFATFLFVQH 1420 PF00169.19.ls: domain 5 of 5, from 1310 to 1420: score 51.7, E = 2.2e-12 *->vikeGwLlkkg.........gkkswkkRyfvLfddvLlyykdkk.kk +k+G ++ +++++ + + +++++Ryf+L +++L +yk+ +++ ah05148 1310 DTKHGMMKFREdrsllglglPSGGFHDRYFILNSSCLRLYKEVRsHR 1356 pkgsipLsgiqvtkvpdn....krkncFeirt.dr....etlllqaesee p + +p+++++v+ ++ + +++ +F ++++++++++++++l+++++ ah05148 1357 PEKEWPIKSLKVYLGVKKklrpPTCWGFTVVHeTEkhekQQWYLCCDTQM 1406 erkeWvkaiqsair<-* e++eW + + +++ ah05148 1407 ELREWFATFLFVQH 1420 //