hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-23420077/chunk_1/iprscan-20080806-23420077.nocrc
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Query sequence: ah05148
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00233                                                 245.5    4.4e-69   5
SM00324                                                 229.5      3e-64   1
SM00105                                                  99.6    3.8e-25   1
SM00454                                                  43.4      3e-08   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00454     1/1      38   105 ..     1    67 []    43.4    3e-08
SM00233     1/5     363   456 ..     1    82 []    74.1  1.7e-17
SM00233     2/5     476   566 ..     1    82 []    34.7  1.2e-05
SM00105     1/1     570   696 ..     1   139 []    99.6  3.8e-25
SM00233     3/5     779   887 ..     1    82 []    58.9  6.3e-13
SM00233     4/5     897   991 ..     1    82 []    20.0     0.34
SM00324     1/1    1003  1179 ..     1   193 []   229.5    3e-64
SM00233     5/5    1310  1422 ..     1    82 []    57.8  1.4e-12

Alignments of top-scoring domains:
SM00454: domain 1 of 1, from 38 to 105: score 43.4, E = 3e-08
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeelllltseedLkel
                        +    sVaeWL+++ leqY+  F+++g+  +   + +s+  L+++
     ah05148    38    EAgDAALSVAEWLRALHLEQYTGLFEQHGLVWATECQGLSDTRLMDM 84   

                   GitllGhRkkIlsaiqklkeq<-*
                   G+ l+GhR++Il ++    ++   
     ah05148    85 GMLLPGHRRRILAGLLRAHTS    105  

SM00233: domain 1 of 5, from 363 to 456: score 74.1, E = 1.7e-17
                   *->vikeGwLlkks...k.swkkryfvLfngvLlyyksk...kpkgsipL
                      vik GwL k  ++++  ++kr+++L+++ L y++s ++   k +i++
     ah05148   363    VIKAGWLDKNPpqgSyIYQKRWVRLDTDHLRYFDSNkdaYSKRFISV 409  

                   sgc.svre.p..cFeivt.drtlllqAeseeereeWvealqsaiaka<-*
                     ++ v    +  Fe++t++rt+ ++Aes+ er+eW++alq+a+a++   
     ah05148   410 ACIsHVAAiGdqKFEVITnNRTFAFRAESDVERKEWMQALQQAMAEQ    456  

SM00233: domain 2 of 5, from 476 to 566: score 34.7, E = 1.2e-05
                   *->vikeGwLlkkskswkkryfvLfngvLlyyksk......kpkgsipLs
                      + + G L  ++    k y+ + ++ + +yk+ ++ + +  + +i++s
     ah05148   476    PDRAGSLELRG-FKNKLYVAVVGDKVQLYKNLeeyhlgIGITFIDMS 521  

                   gcsvre.p..cFeivt.drtlllqAeseeereeWvealqsaiaka<-*
                      v+e ++++F ++t+ r + ++A+se e+e+W+ea+q aia+a   
     ah05148   522 VGNVKEvDrrSFDLTTpYRIFSFSADSELEKEQWLEAMQGAIAEA    566  

SM00105: domain 1 of 1, from 570 to 696: score 99.6, E = 3.8e-25
                   *->eealqlLRsikpgNkkCfDCGavpnPtWaSvnlGvflCieCSGiHRs
                       e  +++ +   +N++C+DCGa p P+WaS+nl v++C +C+G HR+
     ah05148   570    SEVAERIWAAA-PNRFCADCGA-PQPDWASINLCVVICKRCAGEHRG 614  

                   LfGvHiSkVnvRSltLD..tWteeeLrllesckgGNenansfwesnlddf
                   L G  +SkV  RSl++D++ Wte+ ++l++   +GN + n+fw +n+++ 
     ah05148   615 L-GAGVSKV--RSLKMDrkVWTETLIELFL--QLGNGAGNRFWAANVPPS 659  

                   slkpkdsdaaasvKCeddrqkyesfiaaKYeeklf.rvdke..saee<-*
                   +   + s+          ++ +     aKY+e + +r++++ +++ee   
     ah05148   660 EALQPSSS----------PSTRRCHLEAKYREGKYrRYHPLfgNQEE    696  

SM00233: domain 3 of 5, from 779 to 887: score 58.9, E = 6.3e-13
                   *->vikeGwLlkks...........k.swkkryfvLfngvLlyyksk...
                      v ++G+L+k  + ++  ++++ ++ + +r++vL +gvL+y+++++  
     ah05148   779    VSHSGFLYKTAsagkllqdrraReEFSRRWCVLGDGVLSYFENErav 825  

                   kpkgsipLsgcsvre.p.........cFeivt.dr.tlllqAeseeeree
                   +p g+i  s++ +   p+++ ++ +++Fe++t++++ +l+  es+e+++e
     ah05148   826 TPNGEIRASEIVCLAvPppdthgfehTFEVYTeGErLYLFGLESAEQAHE 875  

                   Wvealqsaiaka<-*
                   Wv+++ +a  +    
     ah05148   876 WVKCIAKAFVPP    887  

SM00233: domain 4 of 5, from 897 to 991: score 20.0, E = 0.34
                   *->vikeGwLlkks...k.swkkryfvLfngvLlyyksk.kpkgsipLsg
                      +++ G L  k + ++++ ++ +f L ++ L    +++ + +++ L++
     ah05148   897    FERLGRLPYKAglsLqRAQEGWFSLSGSELRAVFPEgPCEEPLQLRK 943  

                   c.svre.p.....cFeivt.drtlllqAeseeereeWvealqsaiaka<-
                   +++++ + ++++ ++ +v + rtl++q e   ++  W+ a+q+a+a+   
     ah05148   944 LqELSIqGdsenqVLVLVErRRTLYIQGERRLDFMGWLGAIQKAAASM   991  

                   *
                    
     ah05148     -   -    

SM00324: domain 1 of 1, from 1003 to 1179: score 229.5, E = 3e-64
                   *->spiPiivekCieylekrGldteGIYRvsGsksrvkeLreafdsged.
                      s+iP iv++C++y+ ++Gl+ eGIYR++G++s++++L+e+++++  +
     ah05148  1003    SDIPVIVYRCVDYITQCGLTSEGIYRKCGQTSKTQRLLESLRQDARs 1049 

                   dldsldesiteesedleeydvhdvAglLKlyLReLPePLltfelyeefie
                   +            + ++e+ v dv+++LK++LR+LP+ L+t++    ++e
     ah05148  1050 V-----------HLKEGEQHVDDVSSALKRFLRDLPDGLFTRAERLTWLE 1088 

                   aaklyqieatsrkqseksedeeerlralrellslLPpanratLryLl.HL
                   a+++              edeee++ ++rell +LPp+nrat ++L++HL
     ah05148  1089 ASEI--------------EDEEEKVSRYRELLVRLPPVNRATVKALIsHL 1124 

                   nrVaehsevNkMtarNLAivFgPtLlrpp.......ltdikhqnkvvetl
                   ++V+++s+ N M+++NLAivFgPtL++ ++++ + + +  +++n++v ++
     ah05148  1125 YCVQCFSDTNQMNVHNLAIVFGPTLFQTDgqdykagRVVEDLINHYVVVF 1174 

                   ienad<-*
                    ++++   
     ah05148  1175 SVDEE    1179 

SM00233: domain 5 of 5, from 1310 to 1422: score 57.8, E = 1.4e-12
                   *->vikeGwLlkks..........k.swkkryfvLfngvLlyyksk...k
                       +k+G ++ +++++  + + +++++++ryf+L +++L +yk+ ++++
     ah05148  1310    DTKHGMMKFREdrsllglglpSgGFHDRYFILNSSCLRLYKEVrshR 1356 

                   pkgsipLsgcsvre.p..........cFeivt.dr.....tlllqAesee
                   p ++ p+++++v+ +++++ +++   +F++v+++++++++ ++l+++++ 
     ah05148  1357 PEKEWPIKSLKVYLgVkkklrpptcwGFTVVHeTEkhekqQWYLCCDTQM 1406 

                   ereeWvealqsaiaka<-*
                   e++eW++ +  ++++    
     ah05148  1407 ELREWFATFLFVQHDG    1422 

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