hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-23484354/chunk_1/iprscan-20080806-23484354.nocrc
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Query sequence: ah05167
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
PF08332.1.fs Calcium/calmodulin dependent protein kinase   125.1    1.8e-34   1
PF08332.1.ls Calcium/calmodulin dependent protein kinase    45.7    1.4e-10   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
PF08332.1.fs   1/1      84   139 ..     1    56 [.   125.1  1.8e-34
PF08332.1.ls   1/1      84   154 ..     1   128 []    45.7  1.4e-10

Alignments of top-scoring domains:
PF08332.1.fs: domain 1 of 1, from 84 to 139: score 125.1, E = 1.8e-34
                   *->eeqEivkvterlieAIaeGDfetYtklcdpdltaFePealgnlveGl
                      ++qEi+k+te+lieAI++GDfe+Ytk+cdp+lt FePealgnlveG+
     ah05167    84    RKQEIIKITEQLIEAINNGDFEAYTKICDPGLTSFEPEALGNLVEGM 130  

                   eFHrFYFEn<-*
                   +FH+FYFEn   
     ah05167   131 DFHKFYFEN    139  

PF08332.1.ls: domain 1 of 1, from 84 to 154: score 45.7, E = 1.4e-10
                   *->eeqEivkvterlieAIaeGDfetYtklcdpdltaFePealgnlveGl
                      ++qEi+k+te+lieAI++GDfe+Ytk+cdp+lt FePealgnlveG+
     ah05167    84    RKQEIIKITEQLIEAINNGDFEAYTKICDPGLTSFEPEALGNLVEGM 130  

                   eFHrFYFEnfLgkrkkavhttilnphVhllGDdaAciAYvrLtqlmDknG
                   +FH+FYFE    +r                                    
     ah05167   131 DFHKFYFE----NREWSC-------------------------------- 144  

                   lahtvqseETRVweKrdGkWqiVHvHrSaap<-*
                    ++t+                      S  p   
     ah05167   145 -PRTASL--------------------SIPP    154  

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