hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080806/iprscan-20080806-23544119/chunk_1/iprscan-20080806-23544119.nocrc
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Query sequence: ah05266
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 219.2    3.6e-61   1
SM00239                                                 101.0    1.4e-25   1
SM00109                                                  67.4    1.8e-15   1
SM00219                                                 -27.3    1.9e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00109    1/1      13    62 ..     1    61 []    67.4  1.8e-15
SM00239    1/1      83   186 ..     1    92 []   101.0  1.4e-25
SM00219    1/1     250   461 .]     1   280 []   -27.3  1.9e-09
SM00220    1/1     250   456 ..     1   231 []   219.2  3.6e-61

Alignments of top-scoring domains:
SM00109: domain 1 of 1, from 13 to 62: score 67.4, E = 1.8e-15
                   *->Hkfvfrtf.kptfCdvCrksiwgsfkqaaksqglrCseCkvkcHkkC
                      Hkf+++t+++ptfCd+C+++++g+ +q     g++C  C++++Hk+C
     ah05266    13    HKFKIHTYgSPTFCDHCGSLLYGLIHQ-----GMKCDTCDMNVHKQC 54   

                   aekvpaqshksglsC<-*
                   + +vp+        C   
     ah05266    55 VINVPS-------LC    62   

SM00239: domain 1 of 1, from 83 to 186: score 101.0, E = 1.4e-25
                   *->tLtvkiisArnLp........DPYVkvs...........kTkvvkkt
                      +L+v++  A+nL++ ++++ +DPYVk++  +++++ +++kTk+++ t
     ah05266    83    KLHVTVRDAKNLIpmdpnglsDPYVKLKlipdpkneskqKTKTIRST 129  

                   lsgfNPvWnEesetFeFevpp....s.LeieVyDk......dfiGrvtip
                   l   NP+WnE   +F+F++ p++++++L +e++D+++++++df+G ++++
     ah05266   130 L---NPQWNE---SFTFKLKPsdkdRrLSVEIWDWdrttrnDFMGSLSFG 173  

                   pnnahqhsadglihlsell.ggrh.kl<-*
                                 +sel++ + ++++   
     ah05266   174 --------------VSELMkMPASgWY    186  

SM00219: domain 1 of 1, from 250 to 461: score -27.3, E = 1.9e-09
                   *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda......keeFl
                        ++ +LG G FG+V+++  k++++  A+K Lk+d   +++++e  +
     ah05266   250    FNFLMVLGKGSFGKVMLADRKgteELYAIKILKKDVviqdddVECTM 296  

                   rEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLld
                    E +++  l  + p  +  l  c +       v+ l+ vmEy+ gGdL  
     ah05266   297 VEKRVLALL--DKPPFLTQLHSCFQT------VDRLYFVMEYVNGGDLMY 338  

                   yLrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenkv
                   +++  ++ ++ ++ + +   I+ G  +L++++++ RDL   N++++++++
     ah05266   339 HIQQVGK-FKEPQAVFYVAEISIGLFFLHKRGIIYRDLKLDNVMLDSEGH 387  

                   vKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslkdg
                   +KI+DFG+++++  d   G+ + +       g+ +       APE + + 
     ah05266   388 IKIADFGMCKEHMMD---GVTTRTFC-----GTPD-----YIAPEIIAYQ 424  

                   kFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyRlp
                    +    D W++GVlL+E++        g                      
     ah05266   425 PYGKSVDWWAYGVLLYEML-------AG---------------------- 445  

                   kPendlpiSsvtCPdelYdlMlqCWaedPedRPtFselverl<-*
                     +         +   +++   +C                 +   
     ah05266   446 --QV--------MFCYIFMFVYCC----------------VM    461  

SM00220: domain 1 of 1, from 250 to 456: score 219.2, E = 3.6e-61
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik..........eril
                      + +l +lGkG+FGkV+la  k+t +l+AiK++k++   ++++ e ++
     ah05266   250    FNFLMVLGKGSFGKVMLADRKGTEELYAIKILKkdvviqdddvECTM 296  

                   rEikiLkk..dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrg
                    E ++L   ++ P++ +L+ +f++ d+ly+VmEy++G  GdL+ ++++ g
     ah05266   297 VEKRVLALldKPPFLTQLHSCFQTvDRLYFVMEYVNG--GDLMYHIQQVG 344  

                   rrglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hv
                   +      + E++a fy+++i  +L +LH++gIi+RDLK +N++Lds++h+
     ah05266   345 K------FKEpQAVFYVAEISIGLFFLHKRGIIYRDLKLDNVMLDSegHI 388  

                   KlaDFGlArql.......ttfvGTpeYmAPEvl...gYgkpavDiWSlGc
                   K+aDFG++++   ++ +++tf+GTp+Y+APE++  ++Ygk +vD+W+ G+
     ah05266   389 KIADFGMCKEHmmdgvttRTFCGTPDYIAPEIIayqPYGK-SVDWWAYGV 437  

                   ilyElltGkpPFpqldlifkkigSpeakdLikklLvkdPekRltaeaLed
                   +lyE+l+G+  F+                                 ++  
     ah05266   438 LLYEMLAGQVMFC--------------------------------YIFM- 454  

                   eldikaHPff<-*
                           f+   
     ah05266   455 --------FV    456  

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