hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090818/iprscan-20090818-08570563/chunk_1/iprscan-20090818-08570563.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ah05676 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07714.7.ls Protein tyrosine kinase 486.7 2.6e-143 1 PF07714.7.fs Protein tyrosine kinase 484.8 9.7e-143 1 PF00069.15.fs Protein kinase domain 97.6 1.3e-27 1 PF00069.15.ls Protein kinase domain 99.5 9.2e-27 1 PF00629.13.ls MAM domain 91.6 2.2e-24 1 PF00629.13.fs MAM domain 89.7 5.2e-24 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00629.13.fs 1/1 486 642 .. 1 180 [] 89.7 5.2e-24 PF00629.13.ls 1/1 486 642 .. 1 180 [] 91.6 2.2e-24 PF07714.7.fs 1/1 1122 1389 .. 1 272 [] 484.8 9.7e-143 PF00069.15.fs 1/1 1122 1389 .. 1 287 [] 97.6 1.3e-27 PF07714.7.ls 1/1 1122 1389 .. 1 272 [] 486.7 2.6e-143 PF00069.15.ls 1/1 1122 1389 .. 1 287 [] 99.5 9.2e-27 Alignments of top-scoring domains: PF00629.13.fs: domain 1 of 1, from 486 to 642: score 89.7, E = 5.2e-24 *->CdFdwdEeedhPlCgWtqdstdgfd.g.WtrqsgatptsstGPpgDH C+F e++ +CgWtq+ ++++W+++ t++ +DH ah05676 486 CNF----EDG--FCGWTQGTL-SPHtPqWQVR-----TLKDARFQDH 520 tmfqnngsGhYmyvets.dlgqeGqkArLlSPplsppgsacClsFwYhmy h +++ t++ ++ e+ +++ + p + ++s+c+l++++ ++ ah05676 521 Q-------DHALLLSTTdVPASESATVTSATFPAPIKSSPCELRMSWLIR 563 GsgksvgtLnvyvreegesekdpvllWsrsGsqgpn.Wleaevtvnllks G g+ +++++e+++++++ + +W+++ +g + W+ + ll + ah05676 564 GVL--RGNVSLVLVENKTGKEQGRMVWHVAAYEGLSlWQWMVLP--LLDV 609 ekpfqviFEgvrglpgsaGdIAlDDIsindisgpCpe<-* + +f+++ ++++g gs+ +A D+Is is +C ah05676 610 SDRFWLQMVAWWG-QGSRAIVAFDNIS---ISLDCYL 642 PF00629.13.ls: domain 1 of 1, from 486 to 642: score 91.6, E = 2.2e-24 *->CdFdwdEeedhPlCgWtqdstdgfd.g.WtrqsgatptsstGPpgDH C+F e++ +CgWtq+ ++++W+++ t++ +DH ah05676 486 CNF----EDG--FCGWTQGTL-SPHtPqWQVR-----TLKDARFQDH 520 tmfqnngsGhYmyvets.dlgqeGqkArLlSPplsppgsacClsFwYhmy h +++ t++ ++ e+ +++ + p + ++s+c+l++++ ++ ah05676 521 Q-------DHALLLSTTdVPASESATVTSATFPAPIKSSPCELRMSWLIR 563 GsgksvgtLnvyvreegesekdpvllWsrsGsqgpn.Wleaevtvnllks G g+ +++++e+++++++ + +W+++ +g + W+ + ll + ah05676 564 GVL--RGNVSLVLVENKTGKEQGRMVWHVAAYEGLSlWQWMVLP--LLDV 609 ekpfqviFEgvrglpgsaGdIAlDDIsindisgpCpe<-* + +f+++ ++++g gs+ +A D+Is is +C ah05676 610 SDRFWLQMVAWWG-QGSRAIVAFDNIS---ISLDCYL 642 PF07714.7.fs: domain 1 of 1, from 1122 to 1389: score 484.8, E = 9.7e-143 *->lklgkkLGeGaFGeVykGtlkg.sgdgteikVAVKtLkeigaseeei ++l++ LG+GaFGeVy+G g + d ++VAVKtL+e +se++ ah05676 1122 ITLIRGLGHGAFGEVYEGQVSGmPNDPSPLQVAVKTLPE-VCSEQD- 1166 eredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGd dFl EA i +k+ +H+NiVr++Gv ++ + P +i +E+m+gGd ah05676 1167 -ELDFLMEALIISKF-NHQNIVRCIGVSLQ-SLP----RFILLELMAGGD 1209 LldfLrkhr....egrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAAR L++fLr+ r++++++++L + dLl+ a++iA+G++YLe+++f+HRD+AAR ah05676 1210 LKSFLRETRprpsQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAAR 1259 NcLVse...nlvVKIsDFGLaRdiynddyYvrkkgggklPvkWmAPEslk NcL++++++++v+KI+DFG+aRdiy +yY rk+g ++lPvkWm+PE+++ ah05676 1260 NCLLTCpgpGRVAKIGDFGMARDIYRASYY-RKGGCAMLPVKWMPPEAFM 1308 ygkFtskSDVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRLpr +g+Ftsk+D WSFGVlLWEif+lG +P Yp sn+evle++ +G+R+++ ah05676 1309 EGIFTSKTDTWSFGVLLWEIFSLGYMP-YPSKSNQEVLEFV-TSGGRMDP 1356 PenCPdelYdlMlqCWaedPedRPtFselveeL<-* P+nCP +Y++M+qCW+++PedRP F+ ++e++ ah05676 1357 PKNCPGPVYRIMTQCWQHQPEDRPNFAIILERI 1389 PF00069.15.fs: domain 1 of 1, from 1122 to 1389: score 97.6, E = 1.3e-27 *->yelleklGsGsfGtVykakhkgtgk.....iVAvKiikkr.kekskk ++l++ lG G+fG+Vy+++ g + ++++ +VAvK+++ + +e ++ ah05676 1122 ITLIRGLGHGAFGEVYEGQVSGMPNdpsplQVAVKTLPEVcSEQDEL 1168 dktarrlsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldL d ++ E+ i +++H NIvr+i+v + + lE++ gG dL ah05676 1169 D---FLM-EALIISKFNHQNIVRCIGVSLQSLPRFILLELMAGG----DL 1210 fdyls..e..trrkgpllfsedeakkialQilrgleYLHsngiiHRDLKP +++l++++++ ++ +l + ++ ++a+ i++g +YL +n +iHRD+ ah05676 1211 KSFLRetRprPSQPSSL--AMLDLLHVARDIACGCQYLEENHFIHRDIAA 1258 eNILld..nngvvdaflKiaDFGlAkklst.sss.lttfvGTpw..YmAP N+Ll + g v+ Ki+DFG A+ + ++ s ++ + ++ ++m+P ah05676 1259 RNCLLTcpGPGRVA---KIGDFGMARDI-YrASYyRKGGCAMLPvkWMPP 1304 EvllggngygtkvDvWSlGvilyellt.GkpPFsgevqds.ldqlqlirk E + ++k D WS+Gv+l+e ++ G+ P++++ s+ l+ + ah05676 1305 EAFM-EGIFTSKTDTWSFGVLLWEIFSlGYMPYPSK---SnQEVLEFVTS 1350 ilgpplefdspewdsisrsefrrlpnlseeakdLikkcLnkDPskRltae ++ +++ ++p + +++ c++ P++R++++ ah05676 1351 GGRMDPPKNCP-----------------GPVYRIMTQCWQHQPEDRPNFA 1383 eilqHPwf<-* il+ + ah05676 1384 IILER--I 1389 PF07714.7.ls: domain 1 of 1, from 1122 to 1389: score 486.7, E = 2.6e-143 *->lklgkkLGeGaFGeVykGtlkg.sgdgteikVAVKtLkeigaseeei ++l++ LG+GaFGeVy+G g + d ++VAVKtL+e +se++ ah05676 1122 ITLIRGLGHGAFGEVYEGQVSGmPNDPSPLQVAVKTLPE-VCSEQD- 1166 eredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGd dFl EA i +k+ +H+NiVr++Gv ++ + P +i +E+m+gGd ah05676 1167 -ELDFLMEALIISKF-NHQNIVRCIGVSLQ-SLP----RFILLELMAGGD 1209 LldfLrkhr....egrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAAR L++fLr+ r++++++++L + dLl+ a++iA+G++YLe+++f+HRD+AAR ah05676 1210 LKSFLRETRprpsQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAAR 1259 NcLVse...nlvVKIsDFGLaRdiynddyYvrkkgggklPvkWmAPEslk NcL++++++++v+KI+DFG+aRdiy +yY rk+g ++lPvkWm+PE+++ ah05676 1260 NCLLTCpgpGRVAKIGDFGMARDIYRASYY-RKGGCAMLPVKWMPPEAFM 1308 ygkFtskSDVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRLpr +g+Ftsk+D WSFGVlLWEif+lG +P Yp sn+evle++ +G+R+++ ah05676 1309 EGIFTSKTDTWSFGVLLWEIFSLGYMP-YPSKSNQEVLEFV-TSGGRMDP 1356 PenCPdelYdlMlqCWaedPedRPtFselveeL<-* P+nCP +Y++M+qCW+++PedRP F+ ++e++ ah05676 1357 PKNCPGPVYRIMTQCWQHQPEDRPNFAIILERI 1389 PF00069.15.ls: domain 1 of 1, from 1122 to 1389: score 99.5, E = 9.2e-27 *->yelleklGsGsfGtVykakhkgtgk.....iVAvKiikkr.kekskk ++l++ lG G+fG+Vy+++ g + ++++ +VAvK+++ + +e ++ ah05676 1122 ITLIRGLGHGAFGEVYEGQVSGMPNdpsplQVAVKTLPEVcSEQDEL 1168 dktarrlsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldL d ++ E+ i +++H NIvr+i+v + + lE++ gG dL ah05676 1169 D---FLM-EALIISKFNHQNIVRCIGVSLQSLPRFILLELMAGG----DL 1210 fdyls..e..trrkgpllfsedeakkialQilrgleYLHsngiiHRDLKP +++l++++++ ++ +l + ++ ++a+ i++g +YL +n +iHRD+ ah05676 1211 KSFLRetRprPSQPSSL--AMLDLLHVARDIACGCQYLEENHFIHRDIAA 1258 eNILld..nngvvdaflKiaDFGlAkklst.sss.lttfvGTpw..YmAP N+Ll + g v+ Ki+DFG A+ + ++ s ++ + ++ ++m+P ah05676 1259 RNCLLTcpGPGRVA---KIGDFGMARDI-YrASYyRKGGCAMLPvkWMPP 1304 EvllggngygtkvDvWSlGvilyellt.GkpPFsgevqds.ldqlqlirk E + ++k D WS+Gv+l+e ++ G+ P++++ s+ l+ + ah05676 1305 EAFM-EGIFTSKTDTWSFGVLLWEIFSlGYMPYPSK---SnQEVLEFVTS 1350 ilgpplefdspewdsisrsefrrlpnlseeakdLikkcLnkDPskRltae ++ +++ ++p + +++ c++ P++R++++ ah05676 1351 GGRMDPPKNCP-----------------GPVYRIMTQCWQHQPEDRPNFA 1383 eilqHPwf<-* il+ + ah05676 1384 IILER--I 1389 //