hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090818/iprscan-20090818-08570563/chunk_1/iprscan-20090818-08570563.nocrc
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Query sequence: ah05676
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00219                                                 483.9   7.5e-141   1
SM00220                                                 123.8    1.8e-32   1
SM00192                                                  24.6     0.0054   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00192    1/1     443   479 ..     1    47 []    24.6   0.0054
SM00219    1/1    1122  1389 ..     1   280 []   483.9 7.5e-141
SM00220    1/1    1122  1392 ..     1   231 []   123.8  1.8e-32

Alignments of top-scoring domains:
SM00192: domain 1 of 1, from 443 to 479: score 24.6, E = 0.0054
                   *->tCspgepneFqCgngrCIplswvCDGddDCgDGSDEdpaidpenCps
                        s+     F+C ng+ + l + CD + DC+ G+DE+     + C +
     ah05676   443    LQSS-----FTCWNGTVLQLGQACDFHQDCAQGEDES-----QMCRK 479  

                   <-*
                      
     ah05676     -     -    

SM00219: domain 1 of 1, from 1122 to 1389: score 483.9, E = 7.5e-141
                   *->ltlgkkLGeGaFGeVykGtlk........ieVAVKtLkeda....ke
                      +tl++ LG+GaFGeVy+G+ ++ ++++++++VAVKtL e ++++++ 
     ah05676  1122    ITLIRGLGHGAFGEVYEGQVSgmpndpspLQVAVKTLPEVCseqdEL 1168 

                   eFlrEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGd
                   +Fl Ea i +k+  +H+NiV+++Gv +++        P +i++E+m+gGd
     ah05676  1169 DFLMEALIISKF--NHQNIVRCIGVSLQS-------LPRFILLELMAGGD 1209 

                   LldyLrknrpk......lslsdLlsfAlQIAkGMeYLesknfvHRDLAAR
                   L+++Lr++rp+++++++l + dLl+ A +IA+G++YLe+++f+HRD+AAR
     ah05676  1210 LKSFLRETRPRpsqpssLAMLDLLHVARDIACGCQYLEENHFIHRDIAAR 1259 

                   NcLvgenk...vvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllP
                   NcL++ +++++v+KI+DFG++Rd+y         +yYrk g  ++   lP
     ah05676  1260 NCLLTCPGpgrVAKIGDFGMARDIYRA-------SYYRKGG--CAM--LP 1298 

                   irWmAPEslkdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsnee
                   ++Wm+PE++++g+Ftsk+D WSFGVlLWEif+lG +PYp      +sn+e
     ah05676  1299 VKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPS-----KSNQE 1343 

                   vleylkkGyRlpkPendlpiSsvtCPdelYdlMlqCWaedPedRPtFsel
                   vle++ +G+R+++P+n        CP  +Y++M+qCW+++PedRP+F+ +
     ah05676  1344 VLEFVTSGGRMDPPKN--------CPGPVYRIMTQCWQHQPEDRPNFAII 1385 

                   verl<-*
                    er+   
     ah05676  1386 LERI    1389 

SM00220: domain 1 of 1, from 1122 to 1392: score 123.8, E = 1.8e-32
                   *->YellkklGkGaFGkVylardkk.....tgrlvAiKvik........e
                       +l++ lG+GaFG+Vy ++  + +++++  +vA+K +++  +++++ 
     ah05676  1122    ITLIRGLGHGAFGEVYEGQVSGmpndpSPLQVAVKTLPevcseqdeL 1168 

                   rilrEikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkk
                   ++l E  i +k +H NIV++++v   +   ++ +E++ G  GdL+++l++
     ah05676  1169 DFLMEALIISKfNHQNIVRCIGVSLQsLPRFILLELMAG--GDLKSFLRE 1216 

                   rgrrglr.kvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds.
                    ++r+ +++ l   +  +++r i+++ +YL ++++iHRD+   N LL+ +
     ah05676  1217 TRPRPSQpSSLAMlDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCp 1266 

                   ....hvKlaDFGlArql.........ttfvGTpeYmAPEvl...gYgkpa
                   +++++ K++DFG+Ar + + +  +++        +m+PE + ++ ++  +
     ah05676  1267 gpgrVAKIGDFGMARDIyrasyyrkgGCAMLPVKWMPPEAFmegIFTS-K 1315 

                   vDiWSlGcilyEllt.GkpPFp..qldlifkkig...........Speak
                    D WS+G++l+E ++ G+ P+p++  +++++ + ++++ +++++ + ++ 
     ah05676  1316 TDTWSFGVLLWEIFSlGYMPYPskSNQEVLEFVTsggrmdppkncPGPVY 1365 

                   dLikklLvkdPekRlta.eaLedeldikaHPff<-*
                    ++ ++++  Pe+R+    +Le        ++    
     ah05676  1366 RIMTQCWQHQPEDRPNFaIILE------RIEYC    1392 

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