# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Oah05954.fasta.nr -Q ah05954.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ah05954, 480 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6812372 sequences Expectation_n fit: rho(ln(x))= 6.9460+/-0.000211; mu= 4.3616+/- 0.012 mean_var=148.0097+/-28.155, 0's: 36 Z-trim: 69 B-trim: 69 in 1/66 Lambda= 0.105421 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|114152873|sp|O75056|SDC3_HUMAN Syndecan-3 (SYND ( 442) 2855 445.6 1e-122 gi|13810649|gb|AAK39969.1|AF248634_1 syndecan 3 [H ( 442) 2849 444.7 1.9e-122 gi|109000859|ref|XP_001092729.1| PREDICTED: simila ( 498) 2749 429.6 7.9e-118 gi|119888633|ref|XP_875616.2| PREDICTED: similar t ( 442) 2681 419.2 9.4e-115 gi|114555293|ref|XP_001149044.1| PREDICTED: simila ( 403) 2514 393.8 3.9e-107 gi|194207786|ref|XP_001500236.2| PREDICTED: simila ( 403) 2377 372.9 7.3e-101 gi|73950489|ref|XP_544449.2| PREDICTED: similar to ( 591) 2379 373.4 7.8e-101 gi|149024102|gb|EDL80599.1| syndecan 3 [Rattus nor ( 442) 2358 370.1 5.8e-100 gi|2507439|sp|P33671|SDC3_RAT Syndecan-3 precursor ( 442) 2353 369.3 9.8e-100 gi|114152874|sp|Q64519|SDC3_MOUSE Syndecan-3 precu ( 442) 2343 367.8 2.8e-99 gi|1399585|gb|AAB03284.1| syndecan-3 ( 442) 2329 365.6 1.2e-98 gi|1399583|gb|AAB03283.1| syndecan-3 ( 442) 2292 360.0 6.1e-97 gi|56206270|emb|CAI22245.1| syndecan 3 [Homo sapie ( 384) 2258 354.8 2e-95 gi|119628042|gb|EAX07637.1| syndecan 3 (N-syndecan ( 346) 2197 345.5 1.1e-92 gi|15559239|gb|AAH13974.1| SDC3 protein [Homo sapi ( 370) 2027 319.6 7.2e-85 gi|1334236|emb|CAA44848.1| neuroglycan [Rattus rat ( 353) 1827 289.2 1e-75 gi|126330542|ref|XP_001381745.1| PREDICTED: simila ( 455) 1497 239.1 1.6e-60 gi|74211964|dbj|BAE29322.1| unnamed protein produc ( 186) 1096 177.8 1.8e-42 gi|1351050|sp|P26261|SDC3_CHICK Syndecan-3 precurs ( 405) 914 150.4 7e-34 gi|57116395|gb|AAW33686.1| syndecan-3 [Meleagris g ( 403) 858 141.9 2.6e-31 gi|2547268|gb|AAB81326.1| syndecan-3 [Xenopus laev ( 390) 690 116.3 1.2e-23 gi|159572670|emb|CAP19380.1| syndecan 3 [Mus muscu ( 148) 623 105.8 7.1e-21 gi|161612024|gb|AAI55982.1| Unknown (protein for I ( 362) 529 91.8 2.7e-16 gi|189532662|ref|XP_001919756.1| PREDICTED: hypoth ( 404) 454 80.4 8e-13 gi|149600328|ref|XP_001519050.1| PREDICTED: hypoth ( 231) 438 77.8 2.9e-12 gi|47216146|emb|CAG10020.1| unnamed protein produc ( 289) 389 70.4 6e-10 gi|118089042|ref|XP_419972.2| PREDICTED: hypotheti ( 308) 381 69.2 1.5e-09 gi|57324|emb|CAA43058.1| syndecan [Rattus norvegic ( 279) 377 68.6 2.1e-09 gi|122132416|sp|Q08DZ5|SDC1_BOVIN Syndecan-1 precu ( 311) 377 68.6 2.2e-09 gi|464744|sp|P26260|SDC1_RAT Syndecan-1 precursor ( 313) 377 68.6 2.2e-09 gi|126345131|ref|XP_001364964.1| PREDICTED: simila ( 251) 374 68.1 2.6e-09 gi|119887694|ref|XP_872136.2| PREDICTED: similar t ( 126) 368 66.9 3e-09 gi|149606353|ref|XP_001521801.1| PREDICTED: simila ( 169) 358 65.5 1.1e-08 gi|74207636|dbj|BAE40064.1| unnamed protein produc ( 311) 357 65.6 1.8e-08 gi|135156|sp|P18828|SDC1_MOUSE Syndecan-1 precurso ( 311) 352 64.8 3.1e-08 gi|1351048|sp|P47951|SDC1_CRIGR Syndecan-1 precurs ( 309) 345 63.8 6.5e-08 gi|666052|emb|CAA88235.1| syndecan-1 [Homo sapiens ( 288) 343 63.4 7.6e-08 gi|135155|sp|P18827|SDC1_HUMAN Syndecan-1 precurso ( 310) 343 63.5 8e-08 gi|338634|gb|AAA60605.1| syndecan ( 310) 343 63.5 8e-08 gi|464743|sp|P34740|SDC1_MESAU Syndecan-1 precurso ( 309) 340 63.0 1.1e-07 gi|148665996|gb|EDK98412.1| syndecan 1, isoform CR ( 258) 338 62.6 1.2e-07 gi|5354039|gb|AAD42345.1|AF134897_1 syndecan-1 [Mu ( 267) 337 62.5 1.4e-07 gi|62702225|gb|AAX93151.1| unknown [Homo sapiens] ( 310) 338 62.7 1.4e-07 gi|149580560|ref|XP_001517354.1| PREDICTED: simila ( 296) 337 62.5 1.5e-07 gi|194220934|ref|XP_001501792.2| PREDICTED: simila ( 452) 335 62.4 2.5e-07 gi|73980589|ref|XP_540099.2| PREDICTED: similar to ( 446) 334 62.2 2.7e-07 gi|14250612|gb|AAH08765.1| Syndecan 1 [Homo sapien ( 310) 331 61.6 2.8e-07 gi|109102131|ref|XP_001095194.1| PREDICTED: syndec ( 310) 331 61.6 2.8e-07 gi|30583913|gb|AAP36205.1| Homo sapiens syndecan 1 ( 311) 331 61.6 2.8e-07 gi|114576379|ref|XP_001140545.1| PREDICTED: simila ( 241) 303 57.3 4.5e-06 >>gi|114152873|sp|O75056|SDC3_HUMAN Syndecan-3 (SYND3) (442 aa) initn: 2855 init1: 2855 opt: 2855 Z-score: 2358.4 bits: 445.6 E(): 1e-122 Smith-Waterman score: 2855; 100.000% identity (100.000% similar) in 442 aa overlap (39-480:1-442) 10 20 30 40 50 60 ah0595 RAAAKQPPRAPRLGNKGARPPPAARARAAAMKPGPPHRAGAAHGAGAGAGAAAGPGARGL :::::::::::::::::::::::::::::: gi|114 MKPGPPHRAGAAHGAGAGAGAAAGPGARGL 10 20 30 70 80 90 100 110 120 ah0595 LLPPLLLLLLAGRAAGAQRWRSENFERPVDLEGSGDDDSFPDDELDDLYSGSGSGYFEQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LLPPLLLLLLAGRAAGAQRWRSENFERPVDLEGSGDDDSFPDDELDDLYSGSGSGYFEQE 40 50 60 70 80 90 130 140 150 160 170 180 ah0595 SGIETAMRFSPDVALAVSTTPAVLPTTNIQPVGTPFEELPSERPTLEPATSPLVVTEVPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 SGIETAMRFSPDVALAVSTTPAVLPTTNIQPVGTPFEELPSERPTLEPATSPLVVTEVPE 100 110 120 130 140 150 190 200 210 220 230 240 ah0595 EPSQRATTVSTTMATTAATSTGDPTVATVPATVATATPSTPAAPPFTATTAVIRTTGVRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 EPSQRATTVSTTMATTAATSTGDPTVATVPATVATATPSTPAAPPFTATTAVIRTTGVRR 160 170 180 190 200 210 250 260 270 280 290 300 ah0595 LLPLPLTTVATARATTPEAPSPPTTAAVLDTEAPTPRLVSTATSRPRALPRPATTQEPDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LLPLPLTTVATARATTPEAPSPPTTAAVLDTEAPTPRLVSTATSRPRALPRPATTQEPDI 220 230 240 250 260 270 310 320 330 340 350 360 ah0595 PERSTLPLGTTAPGPTEVAQTPTPETFLTTIRDEPEVPVSGGPSGDFELPEEETTQPDTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 PERSTLPLGTTAPGPTEVAQTPTPETFLTTIRDEPEVPVSGGPSGDFELPEEETTQPDTA 280 290 300 310 320 330 370 380 390 400 410 420 ah0595 NEVVAVGGAAAKASSPPGTLPKGARPGPGLLDNAIDSGSSAAQLPQKSILERKEVLVAVI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 NEVVAVGGAAAKASSPPGTLPKGARPGPGLLDNAIDSGSSAAQLPQKSILERKEVLVAVI 340 350 360 370 380 390 430 440 450 460 470 480 ah0595 VGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASVTYQKPDKQEEFYA :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 VGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASVTYQKPDKQEEFYA 400 410 420 430 440 >>gi|13810649|gb|AAK39969.1|AF248634_1 syndecan 3 [Homo (442 aa) initn: 2849 init1: 2849 opt: 2849 Z-score: 2353.4 bits: 444.7 E(): 1.9e-122 Smith-Waterman score: 2849; 99.774% identity (100.000% similar) in 442 aa overlap (39-480:1-442) 10 20 30 40 50 60 ah0595 RAAAKQPPRAPRLGNKGARPPPAARARAAAMKPGPPHRAGAAHGAGAGAGAAAGPGARGL :::::::::::::::::::::::::::::: gi|138 MKPGPPHRAGAAHGAGAGAGAAAGPGARGL 10 20 30 70 80 90 100 110 120 ah0595 LLPPLLLLLLAGRAAGAQRWRSENFERPVDLEGSGDDDSFPDDELDDLYSGSGSGYFEQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|138 LLPPLLLLLLAGRAAGAQRWRSENFERPVDLEGSGDDDSFPDDELDDLYSGSGSGYFEQE 40 50 60 70 80 90 130 140 150 160 170 180 ah0595 SGIETAMRFSPDVALAVSTTPAVLPTTNIQPVGTPFEELPSERPTLEPATSPLVVTEVPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|138 SGIETAMRFSPDVALAVSTTPAVLPTTNIQPVGTPFEELPSERPTLEPATSPLVVTEVPE 100 110 120 130 140 150 190 200 210 220 230 240 ah0595 EPSQRATTVSTTMATTAATSTGDPTVATVPATVATATPSTPAAPPFTATTAVIRTTGVRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|138 EPSQRATTVSTTMATTAATSTGDPTVATVPATVATATPSTPAAPPFTATTAVIRTTGVRR 160 170 180 190 200 210 250 260 270 280 290 300 ah0595 LLPLPLTTVATARATTPEAPSPPTTAAVLDTEAPTPRLVSTATSRPRALPRPATTQEPDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|138 LLPLPLTTVATARATTPEAPSPPTTAAVLDTEAPTPRLVSTATSRPRALPRPATTQEPDI 220 230 240 250 260 270 310 320 330 340 350 360 ah0595 PERSTLPLGTTAPGPTEVAQTPTPETFLTTIRDEPEVPVSGGPSGDFELPEEETTQPDTA ::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::: gi|138 PERSTLPLGTTAPGPTEVAQTPTPETFLTTIRNEPEVPVSGGPSGDFELPEEETTQPDTA 280 290 300 310 320 330 370 380 390 400 410 420 ah0595 NEVVAVGGAAAKASSPPGTLPKGARPGPGLLDNAIDSGSSAAQLPQKSILERKEVLVAVI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|138 NEVVAVGGAAAKASSPPGTLPKGARPGPGLLDNAIDSGSSAAQLPQKSILERKEVLVAVI 340 350 360 370 380 390 430 440 450 460 470 480 ah0595 VGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASVTYQKPDKQEEFYA :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|138 VGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASVTYQKPDKQEEFYA 400 410 420 430 440 >>gi|109000859|ref|XP_001092729.1| PREDICTED: similar to (498 aa) initn: 1631 init1: 1631 opt: 2749 Z-score: 2270.5 bits: 429.6 E(): 7.9e-118 Smith-Waterman score: 2753; 91.250% identity (93.333% similar) in 480 aa overlap (1-480:30-498) 10 20 30 ah0595 SASVQPPGRAAAKQPPRAPRLGNKGARPPPA .: :.: : : : .::::. : : : gi|109 MRPSAWRLQGARPGPWQPKRDPSLLPSTAAAEVRPAGSA-----PSSPRLGEAG-RSPRC 10 20 30 40 50 40 50 60 70 80 90 ah0595 ARARAAAMKPGPPHRAGAAHGAGAGAGAAAGPGARGLLLPPLLLLLLAGRAAGAQRWRSE :..:: :::::::::.:::::::::::::::::::::::::::::::::: gi|109 PDAHSAAWYS----FWGAAHGAGAGTGAAAGPGARGLLLPPLLLLLLAGRAAGAQRWRSE 60 70 80 90 100 110 100 110 120 130 140 150 ah0595 NFERPVDLEGSGDDDSFPDDELDDLYSGSGSGYFEQESGIETAMRFSPDVALAVSTTPAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 NFERPVDLEGSGDDDSFPDDELDDLYSGSGSGYFEQESGIETAMRFSPDVALAVSTTPAV 120 130 140 150 160 170 160 170 180 190 200 210 ah0595 LPTTNIQPVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTGD :::::::::::::::::::::: ::::::::::::::::::::::.::: ::::::.:: gi|109 LPTTNIQPVGTPFEELPSERPTPEPATSPLVVTEVPEEPSQRATTISTTTATTAATTTGA 180 190 200 210 220 230 220 230 240 250 260 270 ah0595 PTVATVPATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARATTPEAPSPP :::::::::: : :::::::::::::::.:::::::::::::::::::::::::::::: gi|109 PTVATVPATV-TRRPSTPAAPPFTATTAVVRTTGVRRLLPLPLTTVATARATTPEAPSPP 240 250 260 270 280 280 290 300 310 320 330 ah0595 TTAAVLDTEAPTPRLVSTATSRPRALPRPATTQEPDIPERSTLPLGTTAPGPTEVAQTPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 TTAAVLDTEAPTPRLVSTATSRPRALPRPATTQEPDIPERSTLPLGTTAPGPTEVAQTPT 290 300 310 320 330 340 340 350 360 370 380 390 ah0595 PETFLTTIRDEPEVPVSGGPSGDFELPEEETTQPDTANEVVAVGGAAAKASSPPGTLPKG ::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::: gi|109 PETFLTTIRDEPEVPVSGGPSGDFELPEEETTQPDTANEVVAVGGAAAKPSSPPGTLPKG 350 360 370 380 390 400 400 410 420 430 440 450 ah0595 ARPGPGLLDNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 ARPGPGLLDNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKK 410 420 430 440 450 460 460 470 480 ah0595 KDEGSYTLEEPKQASVTYQKPDKQEEFYA ::::::::::::::::::::::::::::: gi|109 KDEGSYTLEEPKQASVTYQKPDKQEEFYA 470 480 490 >>gi|119888633|ref|XP_875616.2| PREDICTED: similar to SD (442 aa) initn: 2681 init1: 2681 opt: 2681 Z-score: 2215.3 bits: 419.2 E(): 9.4e-115 Smith-Waterman score: 2681; 93.213% identity (97.059% similar) in 442 aa overlap (39-480:1-442) 10 20 30 40 50 60 ah0595 RAAAKQPPRAPRLGNKGARPPPAARARAAAMKPGPPHRAGAAHGAGAGAGAAAGPGARGL :::::::::::::::::::::::::::::: gi|119 MKPGPPHRAGAAHGAGAGAGAAAGPGARGL 10 20 30 70 80 90 100 110 120 ah0595 LLPPLLLLLLAGRAAGAQRWRSENFERPVDLEGSGDDDSFPDDELDDLYSGSGSGYFEQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LLPPLLLLLLAGRAAGAQRWRSENFERPVDLEGSGDDDSFPDDELDDLYSGSGSGYFEQE 40 50 60 70 80 90 130 140 150 160 170 180 ah0595 SGIETAMRFSPDVALAVSTTPAVLPTTNIQPVGTPFEELPSERPTLEPATSPLVVTEVPE ::::::::::::::::.::::::::: .::::::::::::::::: :::::: .:::::: gi|119 SGIETAMRFSPDVALAMSTTPAVLPTMDIQPVGTPFEELPSERPTPEPATSPPLVTEVPE 100 110 120 130 140 150 190 200 210 220 230 240 ah0595 EPSQRATTVSTTMATTAATSTGDPTVATVPATVATATPSTPAAPPFTATTAVIRTTGVRR ::::::::::: :::.::.:: :::::::::::::.:: ::::: .:::.:.::::::: gi|119 EPSQRATTVSTPTATTTATTTGPPTVATVPATVATAVPSIPAAPPSAATTSVVRTTGVRR 160 170 180 190 200 210 250 260 270 280 290 300 ah0595 LLPLPLTTVATARATTPEAPSPPTTAAVLDTEAPTPRLVSTATSRPRALPRPATTQEPDI ::::::::.:::::::: .::::::.::::::::::::::::::::::::::::::.::: gi|119 LLPLPLTTAATARATTPAVPSPPTTVAVLDTEAPTPRLVSTATSRPRALPRPATTQKPDI 220 230 240 250 260 270 310 320 330 340 350 360 ah0595 PERSTLPLGTTAPGPTEVAQTPTPETFLTTIRDEPEVPVSGGPSGDFELPEEETTQPDTA ::.::::::::::::::::::::::.::::::::::.:::::::::::: :::::::::: gi|119 PEKSTLPLGTTAPGPTEVAQTPTPESFLTTIRDEPEMPVSGGPSGDFELSEEETTQPDTA 280 290 300 310 320 330 370 380 390 400 410 420 ah0595 NEVVAVGGAAAKASSPPGTLPKGARPGPGLLDNAIDSGSSAAQLPQKSILERKEVLVAVI ::::::::: :: : :::::::::.::::::::::::::::::::::::::::::::::: gi|119 NEVVAVGGAEAKPSPPPGTLPKGAHPGPGLLDNAIDSGSSAAQLPQKSILERKEVLVAVI 340 350 360 370 380 390 430 440 450 460 470 480 ah0595 VGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASVTYQKPDKQEEFYA :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASVTYQKPDKQEEFYA 400 410 420 430 440 >>gi|114555293|ref|XP_001149044.1| PREDICTED: similar to (403 aa) initn: 2514 init1: 2514 opt: 2514 Z-score: 2078.6 bits: 393.8 E(): 3.9e-107 Smith-Waterman score: 2514; 99.242% identity (99.495% similar) in 396 aa overlap (85-480:8-403) 60 70 80 90 100 110 ah0595 AGAGAAAGPGARGLLLPPLLLLLLAGRAAGAQRWRSENFERPVDLEGSGDDDSFPDDELD :::::::::::::::::::::::::::::: gi|114 MEKMVVMAQRWRSENFERPVDLEGSGDDDSFPDDELD 10 20 30 120 130 140 150 160 170 ah0595 DLYSGSGSGYFEQESGIETAMRFSPDVALAVSTTPAVLPTTNIQPVGTPFEELPSERPTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 DLYSGSGSGYFEQESGIETAMRFSPDVALAVSTTPAVLPTTNIQPVGTPFEELPSERPTL 40 50 60 70 80 90 180 190 200 210 220 230 ah0595 EPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTGDPTVATVPATVATATPSTPAAPPF :::::::::::::::::::::::::::::::::::: ::::::::::::.::::::::: gi|114 EPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTGALTVATVPATVATAAPSTPAAPPF 100 110 120 130 140 150 240 250 260 270 280 290 ah0595 TATTAVIRTTGVRRLLPLPLTTVATARATTPEAPSPPTTAAVLDTEAPTPRLVSTATSRP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 TATTAVIRTTGVRRLLPLPLTTVATARATTPEAPSPPTTAAVLDTEAPTPRLVSTATSRP 160 170 180 190 200 210 300 310 320 330 340 350 ah0595 RALPRPATTQEPDIPERSTLPLGTTAPGPTEVAQTPTPETFLTTIRDEPEVPVSGGPSGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 RALPRPATTQEPDIPERSTLPLGTTAPGPTEVAQTPTPETFLTTIRDEPEVPVSGGPSGD 220 230 240 250 260 270 360 370 380 390 400 410 ah0595 FELPEEETTQPDTANEVVAVGGAAAKASSPPGTLPKGARPGPGLLDNAIDSGSSAAQLPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 FELPEEETTQPDTANEVVAVGGAAAKASSPPGTLPKGARPGPGLLDNAIDSGSSAAQLPQ 280 290 300 310 320 330 420 430 440 450 460 470 ah0595 KSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASVTYQKPDK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 KSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASVTYQKPDK 340 350 360 370 380 390 480 ah0595 QEEFYA :::::: gi|114 QEEFYA 400 >>gi|194207786|ref|XP_001500236.2| PREDICTED: similar to (403 aa) initn: 2377 init1: 2377 opt: 2377 Z-score: 1966.0 bits: 372.9 E(): 7.3e-101 Smith-Waterman score: 2377; 92.929% identity (96.465% similar) in 396 aa overlap (85-480:8-403) 60 70 80 90 100 110 ah0595 AGAGAAAGPGARGLLLPPLLLLLLAGRAAGAQRWRSENFERPVDLEGSGDDDSFPDDELD :::::::::::::::::::::: ::::::: gi|194 MEEMVVMAQRWRSENFERPVDLEGSGDDDPFPDDELD 10 20 30 120 130 140 150 160 170 ah0595 DLYSGSGSGYFEQESGIETAMRFSPDVALAVSTTPAVLPTTNIQPVGTPFEELPSERPTL ::::::::::::::::::::::::::.::::::::::::: .::::::::::: ::::: gi|194 DLYSGSGSGYFEQESGIETAMRFSPDAALAVSTTPAVLPTMDIQPVGTPFEELTSERPTP 40 50 60 70 80 90 180 190 200 210 220 230 ah0595 EPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTGDPTVATVPATVATATPSTPAAPPF :::::: :::::::::::::::.:: ::::::.:: ::.::::::::::.:: ::::: gi|194 EPATSPPVVTEVPEEPSQRATTISTPTATTAATTTGAPTAATVPATVATAAPSIPAAPPS 100 110 120 130 140 150 240 250 260 270 280 290 ah0595 TATTAVIRTTGVRRLLPLPLTTVATARATTPEAPSPPTTAAVLDTEAPTPRLVSTATSRP ::::.:.::::.::::::::::.:::::::: .::::::.:::::::::::::::::::: gi|194 TATTSVVRTTGIRRLLPLPLTTAATARATTPAVPSPPTTVAVLDTEAPTPRLVSTATSRP 160 170 180 190 200 210 300 310 320 330 340 350 ah0595 RALPRPATTQEPDIPERSTLPLGTTAPGPTEVAQTPTPETFLTTIRDEPEVPVSGGPSGD ::::::.::::::::::::::::::::::::::::::::.:::::::: ::::::::::: gi|194 RALPRPSTTQEPDIPERSTLPLGTTAPGPTEVAQTPTPESFLTTIRDEREVPVSGGPSGD 220 230 240 250 260 270 360 370 380 390 400 410 ah0595 FELPEEETTQPDTANEVVAVGGAAAKASSPPGTLPKGARPGPGLLDNAIDSGSSAAQLPQ :::::::::::::::::::::::::: : ::::::::::::::::::::::::::::::: gi|194 FELPEEETTQPDTANEVVAVGGAAAKPSPPPGTLPKGARPGPGLLDNAIDSGSSAAQLPQ 280 290 300 310 320 330 420 430 440 450 460 470 ah0595 KSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASVTYQKPDK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 KSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASVTYQKPDK 340 350 360 370 380 390 480 ah0595 QEEFYA :::::: gi|194 QEEFYA 400 >>gi|73950489|ref|XP_544449.2| PREDICTED: similar to syn (591 aa) initn: 2350 init1: 2350 opt: 2379 Z-score: 1965.4 bits: 373.4 E(): 7.8e-101 Smith-Waterman score: 2391; 80.000% identity (87.010% similar) in 485 aa overlap (6-480:112-591) 10 20 30 ah0595 SASVQPPGRAAAKQPPRAPRLGNKGARPPPAARAR : . .: :: .: .... : :..::: gi|739 DAPDASSCRAPSVPARPGAGAPEAEAERGVPEASSALKQ-----HLLSRATTPWPGTRAR 90 100 110 120 130 40 50 60 70 80 ah0595 AAAMK--PG---PPHRAGAAHGAGAGAGAAAGPGARGLLLPPLLLLLLAGRAAG-----A . : : : ::. . :. : : :. :.. . : ::. : gi|739 PGQTKGCSGEERPQLRASPGSDPGGLLGQQFPSGHGGVAQSPVVAVRRADGAAALAPAWA 140 150 160 170 180 190 90 100 110 120 130 140 ah0595 QRWRSENFERPVDLEGSGDDDSFPDDELDDLYSGSGSGYFEQESGIETAMRFSPDVALAV ::::.::::::::::::::::::::::::::::::::::::::::::::::::::::.:: gi|739 QRWRNENFERPVDLEGSGDDDSFPDDELDDLYSGSGSGYFEQESGIETAMRFSPDVAMAV 200 210 220 230 240 250 150 160 170 180 190 200 ah0595 STTPAVLPTTNIQPVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMATTA ::: :::::..::::::::::::::.:: :::::: :::::::::::::::.:: : :: gi|739 STTAAVLPTVDIQPVGTPFEELPSEHPTPEPATSPPVVTEVPEEPSQRATTISTPTAPTA 260 270 280 290 300 310 210 220 230 240 250 260 ah0595 ATSTGDPTVATVPATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARATTP ::..: ::::::::::::.:: ::::: ::::.:::::::::::::::::.:::::::: gi|739 ATTAGALTVATVPATVATAVPSIPAAPPSTATTSVIRTTGVRRLLPLPLTTAATARATTP 320 330 340 350 360 370 270 280 290 300 310 320 ah0595 EAPSPPTTAAVLDTEAPTPRLVSTATSRPRALPRPATTQEPDIPERSTLPLGTTAPGPTE :::::::.:::::::::::.:::::::::::::::::::::.::.:::::::::::::: gi|739 AAPSPPTTVAVLDTEAPTPRMVSTATSRPRALPRPATTQEPDLPEKSTLPLGTTAPGPTE 380 390 400 410 420 430 330 340 350 360 370 380 ah0595 VAQTPTPETFLTTIRDEPEVPVSGGPSGDFELPEEETTQPDTANEVVAVGGAAAKASSPP :::::: :. ::::::::::::::::::::::::::::::::::::::::::::: : :: gi|739 VAQTPTLESVLTTIRDEPEVPVSGGPSGDFELPEEETTQPDTANEVVAVGGAAAKPSPPP 440 450 460 470 480 490 390 400 410 420 430 440 ah0595 GTLPKGARPGPGLLDNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVVGALFAAFLVTLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 GTLPKGARPGPGLLDNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVVGALFAAFLVTLL 500 510 520 530 540 550 450 460 470 480 ah0595 IYRMKKKDEGSYTLEEPKQASVTYQKPDKQEEFYA ::::::::::::::::::::::::::::::::::: gi|739 IYRMKKKDEGSYTLEEPKQASVTYQKPDKQEEFYA 560 570 580 590 >>gi|149024102|gb|EDL80599.1| syndecan 3 [Rattus norvegi (442 aa) initn: 1521 init1: 954 opt: 2358 Z-score: 1949.8 bits: 370.1 E(): 5.8e-100 Smith-Waterman score: 2358; 84.494% identity (92.809% similar) in 445 aa overlap (39-480:1-442) 10 20 30 40 50 60 ah0595 RAAAKQPPRAPRLGNKGARPPPAARARAAAMKPGPPHRAGAAHGAGAGAGAAAGPGARGL ::::::.: :.:.: . . :. ::::::: gi|149 MKPGPPRR-GTAQGQRVDT-ATHGPGARGL 10 20 70 80 90 100 110 120 ah0595 LLPPLLLLLLAGRAAGAQRWRSENFERPVDLEGSGDDDSFPDDELDDLYSGSGSGYFEQE :::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::: gi|149 LLPPLLLLLLAGRAAGAQRWRNENFERPVDLEGSGDDDSFPDDELDDLYSGSGSGYFEQE 30 40 50 60 70 80 130 140 150 160 170 180 ah0595 SGIETAMRFSPDVALAVSTTPAVLPTTNIQPVGTPFEELPSERPTLEPATSP-LV--VTE ::.:::::: ::.:::. :.::.:::: :::: :::::: ::.: ::.::: :: ::: gi|149 SGLETAMRFIPDIALAAPTAPAMLPTTVIQPVDTPFEELLSEHPGPEPVTSPPLVTEVTE 90 100 110 120 130 140 190 200 210 220 230 240 ah0595 VPEEPSQRATTVSTTMATTAATSTGDPTVATVPATVATATPSTPAAPPFTATTAVIRTTG : :::::::::.::: .:::::.:: ::.::.:::.::..:::::::: ::::: ::::: gi|149 VVEEPSQRATTISTTTSTTAATTTGAPTMATAPATAATTAPSTPAAPPATATTADIRTTG 150 160 170 180 190 200 250 260 270 280 290 300 ah0595 VRRLLPLPLTTVATARATTPEAPSPPTTAAVLDTEAPTPRLVSTATSRPRALPRPATTQE .. ::::::::.:::.:::: .::::::.:.:::::::::::.::::::::::::.:::: gi|149 IQGLLPLPLTTAATAKATTPAVPSPPTTVATLDTEAPTPRLVNTATSRPRALPRPVTTQE 210 220 230 240 250 260 310 320 330 340 350 360 ah0595 PDIPERSTLPLGTTAPGPTEVAQTPTPETFLTTIRDEPEVPVSGGPSGDFELPEEETTQP :.. ::::::::::::::::::::::::..::: .::::::::::::::::: .:::::: gi|149 PEVAERSTLPLGTTAPGPTEVAQTPTPESLLTTTQDEPEVPVSGGPSGDFEL-QEETTQP 270 280 290 300 310 320 370 380 390 400 410 420 ah0595 DTANEVVAVGGAAAKASSPPGTLPKGARPGPGLLDNAIDSGSSAAQLPQKSILERKEVLV ::::::::: ::::: : : :::::::::: :: :::::::::::::::::::::::::: gi|149 DTANEVVAVEGAAAKPSPPLGTLPKGARPGLGLHDNAIDSGSSAAQLPQKSILERKEVLV 330 340 350 360 370 380 430 440 450 460 470 480 ah0595 AVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASVTYQKPDKQEEFYA ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 AVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASVTYQKPDKQEEFYA 390 400 410 420 430 440 >>gi|2507439|sp|P33671|SDC3_RAT Syndecan-3 precursor (SY (442 aa) initn: 1522 init1: 949 opt: 2353 Z-score: 1945.7 bits: 369.3 E(): 9.8e-100 Smith-Waterman score: 2353; 84.270% identity (92.809% similar) in 445 aa overlap (39-480:1-442) 10 20 30 40 50 60 ah0595 RAAAKQPPRAPRLGNKGARPPPAARARAAAMKPGPPHRAGAAHGAGAGAGAAAGPGARGL ::::::.: :.:.: . . :. ::::::: gi|250 MKPGPPRR-GTAQGQRVDT-ATHGPGARGL 10 20 70 80 90 100 110 120 ah0595 LLPPLLLLLLAGRAAGAQRWRSENFERPVDLEGSGDDDSFPDDELDDLYSGSGSGYFEQE :::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::: gi|250 LLPPLLLLLLAGRAAGAQRWRNENFERPVDLEGSGDDDSFPDDELDDLYSGSGSGYFEQE 30 40 50 60 70 80 130 140 150 160 170 180 ah0595 SGIETAMRFSPDVALAVSTTPAVLPTTNIQPVGTPFEELPSERPTLEPATSP-LV--VTE ::.:::::: ::.:::. :.::.:::: :::: :::::: ::.: ::.::: :: ::: gi|250 SGLETAMRFIPDIALAAPTAPAMLPTTVIQPVDTPFEELLSEHPGPEPVTSPPLVTEVTE 90 100 110 120 130 140 190 200 210 220 230 240 ah0595 VPEEPSQRATTVSTTMATTAATSTGDPTVATVPATVATATPSTPAAPPFTATTAVIRTTG : :::::::::.::: .:::::.:: ::.::.:::.::..:::::::: ::::: ::::: gi|250 VVEEPSQRATTISTTTSTTAATTTGAPTMATAPATAATTAPSTPAAPPATATTADIRTTG 150 160 170 180 190 200 250 260 270 280 290 300 ah0595 VRRLLPLPLTTVATARATTPEAPSPPTTAAVLDTEAPTPRLVSTATSRPRALPRPATTQE .. ::::::::.:::.:::: .::::::...:::::::::::.::::::::::::.:::: gi|250 IQGLLPLPLTTAATAKATTPAVPSPPTTVTTLDTEAPTPRLVNTATSRPRALPRPVTTQE 210 220 230 240 250 260 310 320 330 340 350 360 ah0595 PDIPERSTLPLGTTAPGPTEVAQTPTPETFLTTIRDEPEVPVSGGPSGDFELPEEETTQP :.. ::::::::::::::::::::::::..::: .::::::::::::::::: .:::::: gi|250 PEVAERSTLPLGTTAPGPTEVAQTPTPESLLTTTQDEPEVPVSGGPSGDFEL-QEETTQP 270 280 290 300 310 320 370 380 390 400 410 420 ah0595 DTANEVVAVGGAAAKASSPPGTLPKGARPGPGLLDNAIDSGSSAAQLPQKSILERKEVLV ::::::::: ::::: : : :::::::::: :: :::::::::::::::::::::::::: gi|250 DTANEVVAVEGAAAKPSPPLGTLPKGARPGLGLHDNAIDSGSSAAQLPQKSILERKEVLV 330 340 350 360 370 380 430 440 450 460 470 480 ah0595 AVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASVTYQKPDKQEEFYA ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|250 AVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASVTYQKPDKQEEFYA 390 400 410 420 430 440 >>gi|114152874|sp|Q64519|SDC3_MOUSE Syndecan-3 precursor (442 aa) initn: 1565 init1: 932 opt: 2343 Z-score: 1937.5 bits: 367.8 E(): 2.8e-99 Smith-Waterman score: 2343; 83.371% identity (92.809% similar) in 445 aa overlap (39-480:1-442) 10 20 30 40 50 60 ah0595 RAAAKQPPRAPRLGNKGARPPPAARARAAAMKPGPPHRAGAAHGAGAGAGAAAGPGARGL ::::::.: :.:.: . . :. .:::::: gi|114 MKPGPPRR-GTAQGQRVDT-ATHAPGARGL 10 20 70 80 90 100 110 120 ah0595 LLPPLLLLLLAGRAAGAQRWRSENFERPVDLEGSGDDDSFPDDELDDLYSGSGSGYFEQE :::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::: gi|114 LLPPLLLLLLAGRAAGAQRWRNENFERPVDLEGSGDDDSFPDDELDDLYSGSGSGYFEQE 30 40 50 60 70 80 130 140 150 160 170 180 ah0595 SGIETAMRFSPDVALAVSTTPAVLPTTNIQPVGTPFEELPSERPTLEPATSP-LV--VTE ::.:::::: ::.:::. :.::.:::: :::: :::::: ::.:. ::.::: :: ::: gi|114 SGLETAMRFIPDMALAAPTAPAMLPTTVIQPVDTPFEELLSEHPSPEPVTSPPLVTEVTE 90 100 110 120 130 140 190 200 210 220 230 240 ah0595 VPEEPSQRATTVSTTMATTAATSTGDPTVATVPATVATATPSTPAAPPFTATTAVIRTTG : :: ::.:::.::: .:::::.:: ::.::.:::.::..:::: ::: :::.: .:::: gi|114 VVEESSQKATTISTTTSTTAATTTGAPTMATAPATAATTAPSTPEAPPATATVADVRTTG 150 160 170 180 190 200 250 260 270 280 290 300 ah0595 VRRLLPLPLTTVATARATTPEAPSPPTTAAVLDTEAPTPRLVSTATSRPRALPRPATTQE .. .:::::::.:::. ::: :::::::.:.:::::::::::.::::::::::::.:::: gi|114 IQGMLPLPLTTAATAKITTPAAPSPPTTVATLDTEAPTPRLVNTATSRPRALPRPVTTQE 210 220 230 240 250 260 310 320 330 340 350 360 ah0595 PDIPERSTLPLGTTAPGPTEVAQTPTPETFLTTIRDEPEVPVSGGPSGDFELPEEETTQP ::. ::::::::::::::::.:::::::..::::.::::::::::::::::: .:::::: gi|114 PDVAERSTLPLGTTAPGPTEMAQTPTPESLLTTIQDEPEVPVSGGPSGDFEL-QEETTQP 270 280 290 300 310 320 370 380 390 400 410 420 ah0595 DTANEVVAVGGAAAKASSPPGTLPKGARPGPGLLDNAIDSGSSAAQLPQKSILERKEVLV ::::::::: ::::: : : ::::::::::::: :::::::::::::::::::::::::: gi|114 DTANEVVAVEGAAAKPSPPLGTLPKGARPGPGLHDNAIDSGSSAAQLPQKSILERKEVLV 330 340 350 360 370 380 430 440 450 460 470 480 ah0595 AVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASVTYQKPDKQEEFYA ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 AVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASVTYQKPDKQEEFYA 390 400 410 420 430 440 480 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Thu Aug 7 00:05:27 2008 done: Thu Aug 7 00:07:47 2008 Total Scan time: 878.300 Total Display time: 0.140 Function used was FASTA [version 34.26.5 April 26, 2007]