hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-00074848/chunk_1/iprscan-20080807-00074848.nocrc
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Query sequence: ah05954
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01034.10.ls Syndecan domain                                659.3   2.9e-195   1
PF01034.10.fs Syndecan domain                                657.4     1e-194   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01034.10.fs   1/1      66   478 ..     1   438 []   657.4   1e-194
PF01034.10.ls   1/1      66   478 ..     1   438 []   659.3 2.9e-195

Alignments of top-scoring domains:
PF01034.10.fs: domain 1 of 1, from 66 to 478: score 657.4, E = 1e-194
                   *->rkllwlalllllLslqsalpQiwaanyRLnterPvDlegSGDDdsFd
                      r+ll+++lllllL++++a++Q+w+++   n+erPvDlegSGDDdsF+
     ah05954    66    RGLLLPPLLLLLLAGRAAGAQRWRSE---NFERPVDLEGSGDDDSFP 109  

                   DdeLDDnySGSGssGyfEqeEtgsdqapsrlkDvelltptptapkPvTlv
                   DdeLDD+ySGSG sGyfEqe +g ++a+++ +Dv+l+ +t++a++P+T +
     ah05954   110 DDELDDLYSGSG-SGYFEQE-SGIETAMRFSPDVALAVSTTPAVLPTTNI 157  

                   QPvdtPfEeflsedtrPeqaTsvpkvTkvsevneegSwkqttasTtssth
                   QPv tPfEe++se +  e+aTs++ vT   ev+ee+S+ +tt+sTt  t+
     ah05954   158 QPVGTPFEELPSERPTLEPATSPLVVT---EVPEEPSQRATTVSTTMATT 204  

                   aattsvevhhsTlPagaatteatttehptihatvatvrtTsvqrllPpvV
                   aat +++++ +T+Pa+ at +++t+ +p+ +at+a  rtT+v+rllP+++
     ah05954   205 AATSTGDPTVATVPATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLPL 254  

                   tvsatpsaTakdtHHHHekeaTTvpttttqlptphqvststakPtslqkp
                   t+ at++aT++++    ++++TT + ++t++ptp++vst+t++P++l++p
     ah05954   255 TTVATARATTPEA----PSPPTTAAVLDTEAPTPRLVSTATSRPRALPRP 300  

                   itshHehedtepgthetstptapgqaevstvnhpgrletggdsttevpas
                   +t++ e++  e++t +++++tapg++ev+++++p+  +t+  +++evp+s
     ah05954   301 ATTQ-EPDIPERST-LPLGTTAPGPTEVAQTPTPETFLTTIRDEPEVPVS 348  

                   dgLvDLtpSgdlEiqeeDviPqpEestepdltnEtsaentaaaapep...
                   +g     pSgd+E+  e      Ee+t+pd++nE++a+ +aaa+ + +++
     ah05954   349 GG-----PSGDFELP-E------EETTQPDTANEVVAVGGAAAKASSppg 386  

                   .lqrgqpPdiGLIDNtVdsGaSaAqlsqkniLeRKEVLaAVIaGGvVGli
                   +l++g++P+ GL DN++dsG+SaAql+qk+iLeRKEVL+AVI+GGvVG++
     ah05954   387 tLPKGARPGPGLLDNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVVGAL 436  

                   FAvfLVgfllYRMKKKDEGSYsLEEPKQAngYgsYQKPtkqTeEF<-*
                   FA+fLV++l+YRMKKKDEGSY+LEEPKQA+  ++YQKP+kq eEF   
     ah05954   437 FAAFLVTLLIYRMKKKDEGSYTLEEPKQAS--VTYQKPDKQ-EEF    478  

PF01034.10.ls: domain 1 of 1, from 66 to 478: score 659.3, E = 2.9e-195
                   *->rkllwlalllllLslqsalpQiwaanyRLnterPvDlegSGDDdsFd
                      r+ll+++lllllL++++a++Q+w+++   n+erPvDlegSGDDdsF+
     ah05954    66    RGLLLPPLLLLLLAGRAAGAQRWRSE---NFERPVDLEGSGDDDSFP 109  

                   DdeLDDnySGSGssGyfEqeEtgsdqapsrlkDvelltptptapkPvTlv
                   DdeLDD+ySGSG sGyfEqe +g ++a+++ +Dv+l+ +t++a++P+T +
     ah05954   110 DDELDDLYSGSG-SGYFEQE-SGIETAMRFSPDVALAVSTTPAVLPTTNI 157  

                   QPvdtPfEeflsedtrPeqaTsvpkvTkvsevneegSwkqttasTtssth
                   QPv tPfEe++se +  e+aTs++ vT   ev+ee+S+ +tt+sTt  t+
     ah05954   158 QPVGTPFEELPSERPTLEPATSPLVVT---EVPEEPSQRATTVSTTMATT 204  

                   aattsvevhhsTlPagaatteatttehptihatvatvrtTsvqrllPpvV
                   aat +++++ +T+Pa+ at +++t+ +p+ +at+a  rtT+v+rllP+++
     ah05954   205 AATSTGDPTVATVPATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLPL 254  

                   tvsatpsaTakdtHHHHekeaTTvpttttqlptphqvststakPtslqkp
                   t+ at++aT++++    ++++TT + ++t++ptp++vst+t++P++l++p
     ah05954   255 TTVATARATTPEA----PSPPTTAAVLDTEAPTPRLVSTATSRPRALPRP 300  

                   itshHehedtepgthetstptapgqaevstvnhpgrletggdsttevpas
                   +t++ e++  e++t +++++tapg++ev+++++p+  +t+  +++evp+s
     ah05954   301 ATTQ-EPDIPERST-LPLGTTAPGPTEVAQTPTPETFLTTIRDEPEVPVS 348  

                   dgLvDLtpSgdlEiqeeDviPqpEestepdltnEtsaentaaaapep...
                   +g     pSgd+E+  e      Ee+t+pd++nE++a+ +aaa+ + +++
     ah05954   349 GG-----PSGDFELP-E------EETTQPDTANEVVAVGGAAAKASSppg 386  

                   .lqrgqpPdiGLIDNtVdsGaSaAqlsqkniLeRKEVLaAVIaGGvVGli
                   +l++g++P+ GL DN++dsG+SaAql+qk+iLeRKEVL+AVI+GGvVG++
     ah05954   387 tLPKGARPGPGLLDNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVVGAL 436  

                   FAvfLVgfllYRMKKKDEGSYsLEEPKQAngYgsYQKPtkqTeEF<-*
                   FA+fLV++l+YRMKKKDEGSY+LEEPKQA+  ++YQKP+kq eEF   
     ah05954   437 FAAFLVTLLIYRMKKKDEGSYTLEEPKQAS--VTYQKPDKQ-EEF    478  

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