hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-00131616/chunk_1/iprscan-20080807-00131616.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ah06279 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00133.12.fs tRNA synthetases class I (I, L, M and V) 586.4 2.4e-173 1 PF00133.12.ls tRNA synthetases class I (I, L, M and V) 410.6 2e-120 1 PF08264.3.ls Anticodon-binding domain 132.1 1.5e-36 1 PF08264.3.fs Anticodon-binding domain 130.2 3e-36 1 PF09334.1.fs tRNA synthetases class I (M) 15.1 8.2e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00133.12.ls 1/1 1 491 [. 1 724 [] 410.6 2e-120 PF00133.12.fs 1/1 12 491 .. 143 724 .] 586.4 2.4e-173 PF09334.1.fs 1/1 412 429 .. 354 371 .. 15.1 8.2e-05 PF08264.3.ls 1/1 535 688 .. 1 176 [] 132.1 1.5e-36 PF08264.3.fs 1/1 535 688 .. 1 176 [] 130.2 3e-36 Alignments of top-scoring domains: PF00133.12.ls: domain 1 of 1, from 1 to 491: score 410.6, E = 2e-120 *->qiyefWdeqgyFkkslenrKgskpsFvlhDGPPnATGllHiGHALnk +F + ah06279 1 ----------VFCAL-------------------------------- 5 tLKDiviRykrmqGfdvlwvpGwDhHGLPiElkVEkKLGikekkdrhklG + ah06279 6 ---------------------------------------V---------- 6 rekFrekCrewkaeyadeirsqfkrLGvsvDwdreYfTLdpeleaavwrv p+ + av ++ ah06279 7 ----------------------------------------PGSSVAVTEA 16 FveLhdkGLiYRGkKvVnWspklnTALSeaEVqQeYKDvk.RTLLdVPGY Fv+L++ GL+YR + +VnWs +l++A+S++EV e++ + T L PG ah06279 17 FVRLYKAGLLYRNHQLVNWSCALRSAISDIEV--ENRPLPgHTQLRLPGC 64 DkKVEFdpsihvaFplaDdakladgkgvkdvdspaslviWTTTPWTLpgN V F+++ vaFp+ ++ ++ a v+ TT+P+TLpg+ ah06279 65 PTPVSFGLLFSVAFPV------DGEPD-------AEVVVGTTRPETLPGD 101 tAvAVnPefnYvkvkDavtgellILAeaLleslykkkkeskyiIledfrg +AvAV+P+ d r+ ah06279 102 VAVAVHPD--------------------------------------DSRY 113 keLegkkyihPFpYFlsdkldReipiiaddyVdmefGTGaVHiAPAHGed ++L+g+ +hP+ ++ p i+d V GTGaV+ +PAH + ah06279 114 THLHGRQLRHPL-------MGQPLPLITDYAVQPHVGTGAVKVTPAHSPA 156 DYevGkkhnLIskddefinpvdddGtyneeaviTGraglypseilpeFqG D e G +h+L ++n++ +dGt++ + + +qG ah06279 157 DAEMGARHGL-----SPLNVIAEDGTMTSLC-------------GDWLQG 188 lkrFkAdkkIvelLkEkGlLlkiekieHsYPhCWRsgtPiiyratpQWFV l+rF A++kI L+E+Gl+ + +++ P C Rsg++i+y ++ QWFV ah06279 189 LHRFVAREKIMSVLSERGLFRGLQNHPMVLPICSRSGDVIEYLLKNQWFV 238 rmkeeklqGktLredalkavedGkvqfvPksigekrygnWleNiqDWCIS r +e + ++a kave G + P++ +k +W i DWC+S ah06279 239 RCQE-------MGARAAKAVESGALELSPSF-HQKNWQHWFSHIGDWCVS 280 RQRwWGhPIPawy...skdtgEvyvreelkelvagreeeegeeawlhr.. RQ+wWGh+IPa++ ++ gE+ + +v+gr e e++e ++++++ ah06279 281 RQLWWGHQIPAYLvveDHAQGEEDC------WVVGRSEAEAREVAAELtg 324 dakdlLTipSgkgagtLeqdeDVLDvWFdSGswpfsvlgwPftntkefkk ++ L tLe+d+DVLD+WF+S++ pfs lgwP + t+++++ ah06279 325 RPGAEL---------TLERDPDVLDTWFSSALFPFSALGWPQE-TPDLAR 364 ffPADmllEGsDQtRGWFysmivlgtaltGsaNGKPQVPYkevLvhGlvr f+P ++l++GsD + +W+ +m +lgt ltG+ P+ vL h vr ah06279 365 FYPLSLLETGSDLLLFWVGRMVMLGTQLTGQL------PFSKVLLHPMVR 408 DeqGrKMSKSlGNvIdPldvidGIsLeDLhaKllggnlqpqeveKakkaq D qGrKMSKSlGNv dP d+i+G++ L +Kl gnl+p e + ++ aq ah06279 409 DRQGRKMSKSLGNVLDPRDIISGVEMQLLQEKLRSGNLDPAELAIVAAAQ 458 kksFPnGIpkyGADALRlwLiassdygrDinfS<-* kk FP GIp++G+DALR++L++ +D+ +S ah06279 459 KKDFPHGIPECGTDALRFTLCSHGVQAGDLHLS 491 PF00133.12.fs: domain 1 of 1, from 12 to 491: score 586.4, E = 2.4e-173 *->avwrvFveLhdkGLiYRGkKvVnWspklnTALSeaEVqQeYKDvk.R av ++Fv+L++ GL+YR + +VnWs +l++A+S++EV e++ + ah06279 12 AVTEAFVRLYKAGLLYRNHQLVNWSCALRSAISDIEV--ENRPLPgH 56 TLLdVPGYDkKVEFdpsihvaFplaDdakladgkgvkdvdspaslviWTT T L PG V F+++ vaFp+ ++ ++ a v+ TT ah06279 57 TQLRLPGCPTPVSFGLLFSVAFPV------DGEPD-------AEVVVGTT 93 TPWTLpgNtAvAVnPefnYvkvkDavtgellILAeaLleslykkkkesky +P+TLpg++AvAV+P+ ah06279 94 RPETLPGDVAVAVHPD---------------------------------- 109 iIledfrgkeLegkkyihPFpYFlsdkldReipiiaddyVdmefGTGaVH d r+++L+g+ +hP+ ++ p i+d V GTGaV+ ah06279 110 ----DSRYTHLHGRQLRHPL-------MGQPLPLITDYAVQPHVGTGAVK 148 iAPAHGedDYevGkkhnLIskddefinpvdddGtyneeaviTGraglyps +PAH + D e G +h+L ++n++ +dGt++ + ah06279 149 VTPAHSPADAEMGARHGL-----SPLNVIAEDGTMTSLC----------- 182 eilpeFqGlkrFkAdkkIvelLkEkGlLlkiekieHsYPhCWRsgtPiiy + +qGl+rF A++kI L+E+Gl+ + +++ P C Rsg++i+y ah06279 183 --GDWLQGLHRFVAREKIMSVLSERGLFRGLQNHPMVLPICSRSGDVIEY 230 ratpQWFVrmkeeklqGktLredalkavedGkvqfvPksigekrygnWle ++ QWFVr +e + ++a kave G + P++ +k +W ah06279 231 LLKNQWFVRCQE-------MGARAAKAVESGALELSPSF-HQKNWQHWFS 272 NiqDWCISRQRwWGhPIPawy...skdtgEvyvreelkelvagreeeege i DWC+SRQ+wWGh+IPa++ ++ gE+ + +v+gr e e++ ah06279 273 HIGDWCVSRQLWWGHQIPAYLvveDHAQGEEDC------WVVGRSEAEAR 316 eawlhr..dakdlLTipSgkgagtLeqdeDVLDvWFdSGswpfsvlgwPf e ++++++ ++ L tLe+d+DVLD+WF+S++ pfs lgwP ah06279 317 EVAAELtgRPGAEL---------TLERDPDVLDTWFSSALFPFSALGWPQ 357 tntkefkkffPADmllEGsDQtRGWFysmivlgtaltGsaNGKPQVPYke + t+++++f+P ++l++GsD + +W+ +m +lgt ltG+ P+ ah06279 358 E-TPDLARFYPLSLLETGSDLLLFWVGRMVMLGTQLTGQL------PFSK 400 vLvhGlvrDeqGrKMSKSlGNvIdPldvidGIsLeDLhaKllggnlqpqe vL h vrD qGrKMSKSlGNv dP d+i+G++ L +Kl gnl+p e ah06279 401 VLLHPMVRDRQGRKMSKSLGNVLDPRDIISGVEMQLLQEKLRSGNLDPAE 450 veKakkaqkksFPnGIpkyGADALRlwLiassdygrDinfS<-* + ++ aqkk FP GIp++G+DALR++L++ +D+ +S ah06279 451 LAIVAAAQKKDFPHGIPECGTDALRFTLCSHGVQAGDLHLS 491 PF09334.1.fs: domain 1 of 1, from 412 to 429: score 15.1, E = 8.2e-05 *->GgKMSKSrGnvVdpdell<-* G+KMSKS+Gnv dp +++ ah06279 412 GRKMSKSLGNVLDPRDII 429 PF08264.3.ls: domain 1 of 1, from 535 to 688: score 132.1, E = 1.5e-36 *->DrWiLsrLnelikevteayenYdFnkAaralyeFiwndlcdwYlels D WiLsrL+ +++e + + +++ +++al++F+ + lcd+Yle + ah06279 535 DAWILSRLALAAQECERGFLTRELSLVTHALHHFWLHNLCDVYLEAV 581 KdrlygeeeegeGsaadddks......eapakraAqttLyevLeallrLL K++l+ +s+++ ++++ +L+ + + lrLL ah06279 582 KPVLW--------------HSprplgpPQ--------VLFSCADLGLRLL 609 aPfmPFitEEiWqrLpg.....eeeSvhladwPvdelevdgfdeake.we aP mPF++EE+WqrLp++++ +++ S+ +a++P a + + ah06279 610 APLMPFLAEELWQRLPPrpgcpPAPSISVAPYP----------SACSlEH 649 lidlekleaemellkevikaiRslRaeknikpslplkvliv<-* ++ ++le+++ ++ev+ +R+lRa + + +++ +vl+ ah06279 650 WRQ-PELERRFSRVQEVVQVLRALRATYQL-TKARPRVLLQ 688 PF08264.3.fs: domain 1 of 1, from 535 to 688: score 130.2, E = 3e-36 *->DrWiLsrLnelikevteayenYdFnkAaralyeFiwndlcdwYlels D WiLsrL+ +++e + + +++ +++al++F+ + lcd+Yle + ah06279 535 DAWILSRLALAAQECERGFLTRELSLVTHALHHFWLHNLCDVYLEAV 581 KdrlygeeeegeGsaadddks......eapakraAqttLyevLeallrLL K++l+ +s+++ ++++ +L+ + + lrLL ah06279 582 KPVLW--------------HSprplgpPQ--------VLFSCADLGLRLL 609 aPfmPFitEEiWqrLpg.....eeeSvhladwPvdelevdgfdeake.we aP mPF++EE+WqrLp++++ +++ S+ +a++P a + + ah06279 610 APLMPFLAEELWQRLPPrpgcpPAPSISVAPYP----------SACSlEH 649 lidlekleaemellkevikaiRslRaeknikpslplkvliv<-* ++ ++le+++ ++ev+ +R+lRa + + +++ +vl+ ah06279 650 WRQ-PELERRFSRVQEVVQVLRALRATYQL-TKARPRVLLQ 688 //