hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-00242669/chunk_1/iprscan-20080807-00242669.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ah06492 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07679.6.ls Immunoglobulin I-set domain 162.1 1.3e-45 3 PF07679.6.fs Immunoglobulin I-set domain 157.7 2.2e-45 4 PF00047.15.ls Immunoglobulin domain 115.1 1.9e-31 3 PF00047.15.fs Immunoglobulin domain 109.4 9.4e-30 3 PF07686.7.fs Immunoglobulin V-set domain 52.5 2.7e-14 3 PF07686.7.ls Immunoglobulin V-set domain 54.3 3.6e-13 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07679.6.ls 1/3 44 131 .. 1 96 [] 74.9 2.3e-19 PF07679.6.fs 1/4 44 131 .. 1 96 [] 73.0 1.1e-20 PF00047.15.fs 1/3 59 116 .. 1 65 [] 42.2 7.8e-11 PF00047.15.ls 1/3 59 116 .. 1 65 [] 44.1 4.5e-10 PF07679.6.fs 2/4 162 253 .. 1 96 [] 68.8 1.8e-19 PF07679.6.ls 2/3 162 253 .. 1 96 [] 70.8 4.2e-18 PF07686.7.ls 2/3 167 254 .. 1 141 [] 27.4 4.6e-05 PF07686.7.fs 2/3 173 262 .. 10 141 .] 31.7 1.8e-08 PF00047.15.ls 2/3 180 238 .. 1 65 [] 54.4 3.6e-13 PF00047.15.fs 2/3 180 238 .. 1 65 [] 52.5 1.2e-13 PF07679.6.ls 3/3 261 370 .. 1 96 [] 16.4 4.6e-05 PF07686.7.ls 3/3 261 371 .. 1 141 [] 18.3 0.00071 PF00047.15.ls 3/3 276 355 .. 1 65 [] 16.6 0.081 PF00047.15.fs 3/3 276 355 .. 1 65 [] 14.7 0.0028 Alignments of top-scoring domains: PF07679.6.ls: domain 1 of 3, from 44 to 131: score 74.9, E = 2.3e-19 *->PkFtqkp.kdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvll Pk k +++++ G ++r++C V+G+P+P W+KdG+ ++s ah06492 44 PKMADKVvPRQVARLGRTVRLQCPVEGDPPPLTMWTKDGRTIHS--- 87 ps.drfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLt + +rf+v g L++++v+++D+G+Y+C+AtN +G+ ++ +L ah06492 88 -GwSRFRVLPQG------LKVKQVEREDAGVYVCKATNGFGSLSVNYTLV 130 V<-* V ah06492 131 V 131 PF07679.6.fs: domain 1 of 4, from 44 to 131: score 73.0, E = 1.1e-20 *->PkFtqkp.kdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvll Pk k +++++ G ++r++C V+G+P+P W+KdG+ ++s ah06492 44 PKMADKVvPRQVARLGRTVRLQCPVEGDPPPLTMWTKDGRTIHS--- 87 ps.drfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLt + +rf+v g L++++v+++D+G+Y+C+AtN +G+ ++ +L ah06492 88 -GwSRFRVLPQG------LKVKQVEREDAGVYVCKATNGFGSLSVNYTLV 130 V<-* V ah06492 131 V 131 PF00047.15.fs: domain 1 of 3, from 59 to 116: score 42.2, E = 7.8e-11 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G +v+L+C v +g+p++ W+++g ++++g++ + ++g ah06492 59 GRTVRLQCPV--EGDPPPLTMWTKDGRtIHsGWSRFRVLPQG----- 98 tsLtitnvtpeDggtYtCvv<-* L +++v++eD+g+Y C + ah06492 99 --LKVKQVEREDAGVYVCKA 116 PF00047.15.ls: domain 1 of 3, from 59 to 116: score 44.1, E = 4.5e-10 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G +v+L+C v +g+p++ W+++g ++++g++ + ++g ah06492 59 GRTVRLQCPV--EGDPPPLTMWTKDGRtIHsGWSRFRVLPQG----- 98 tsLtitnvtpeDggtYtCvv<-* L +++v++eD+g+Y C + ah06492 99 --LKVKQVEREDAGVYVCKA 116 PF07679.6.fs: domain 2 of 4, from 162 to 253: score 68.8, E = 1.8e-19 *->PkFtqkpk....dveVqeGesarfeCkVtGtPePtVsWfKdGqplss P+Ftq+ k +++ + +G+s+r+ C ++G+P P+++W Kd+q l+ ah06492 162 PRFTQPSKmrrrVIARPVGSSVRLKCVASGHPRPDITWMKDDQALT- 207 vllpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasae r + ++ tL +n p+DsGkYtC+++N+aG a+ + ah06492 208 ------RPEAAEPR-KKKWTLSLKNLRPEDSGKYTCRVSNRAGAINATYK 250 LtV<-* + V ah06492 251 VDV 253 PF07679.6.ls: domain 2 of 3, from 162 to 253: score 70.8, E = 4.2e-18 *->PkFtqkpk....dveVqeGesarfeCkVtGtPePtVsWfKdGqplss P+Ftq+ k +++ + +G+s+r+ C ++G+P P+++W Kd+q l+ ah06492 162 PRFTQPSKmrrrVIARPVGSSVRLKCVASGHPRPDITWMKDDQALT- 207 vllpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasae r + ++ tL +n p+DsGkYtC+++N+aG a+ + ah06492 208 ------RPEAAEPR-KKKWTLSLKNLRPEDSGKYTCRVSNRAGAINATYK 250 LtV<-* + V ah06492 251 VDV 253 PF07686.7.ls: domain 2 of 3, from 167 to 254: score 27.4, E = 4.6e-05 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss +s + r ++ ++G sv+L+C s + + ah06492 167 PSKMRR---R------------VIARPVGSSVRLKCVAS---GHP-- 193 ssgtfsiyWyrq.qppgkgpeliiisyysyystsegngtvgerfkgrvtl ++ +i+W++++q + ++ ah06492 194 --RP-DITWMKDdQAL------------------------------TRPE 210 sgnpskgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl<-* ++ p+k++++L+++nl+++DsG Y+C vsn + + +++ V ah06492 211 AAEPRKKKWTLSLKNLRPEDSGKYTCRVSNR-AGAINATYKVDVI 254 PF07686.7.fs: domain 2 of 3, from 173 to 262: score 31.7, E = 1.8e-08 *->rWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssssgtfsiyW r ++ ++G sv+L+C s + + ++ +i+W ah06492 173 R------------VIARPVGSSVRLKCVAS---GHP----RP-DITW 199 yrq.qppgkgpeliiisyysyystsegngtvgerfkgrvtlsgnpskgdf ++++q + ++ ++ p+k+++ ah06492 200 MKDdQAL------------------------------TRPEAAEPRKKKW 219 sLtIsnlqlsDsGtYyCavsns.......nelvfgggtrLtVl<-* +L+++nl+++DsG Y+C vsn + + ++++ + tr + ah06492 220 TLSLKNLRPEDSGKYTCRVSNRagainatYKVDVIQRTRSKPV 262 PF00047.15.ls: domain 2 of 3, from 180 to 238: score 54.4, E = 3.6e-13 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+sv+L C + +g+p +++tW ++++ lt+++ + +++ ah06492 180 GSSVRLKCVA--SGHPRPDITWMKDDQaLTrPEAAEPRKKKWT---- 220 tsLtitnvtpeDggtYtCvv<-* L+++n++peD+g YtC+v ah06492 221 --LSLKNLRPEDSGKYTCRV 238 PF00047.15.fs: domain 2 of 3, from 180 to 238: score 52.5, E = 1.2e-13 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+sv+L C + +g+p +++tW ++++ lt+++ + +++ ah06492 180 GSSVRLKCVA--SGHPRPDITWMKDDQaLTrPEAAEPRKKKWT---- 220 tsLtitnvtpeDggtYtCvv<-* L+++n++peD+g YtC+v ah06492 221 --LSLKNLRPEDSGKYTCRV 238 PF07679.6.ls: domain 3 of 3, from 261 to 370: score 16.4, E = 4.6e-05 *->PkFt.qkpkdveVqeGesarfeCkVtGtPePtVsWfKd......... P+ t+++p + +V G + +f+CkV+ + +P ++W+K + + ++++ ah06492 261 PVLTgTHPVNTTVDFGGTTSFQCKVRSDVKPVIQWLKRveygaegrh 307 Gqplssvllpsdrfkvtydg.......GsgtytLtIsnvqpdDsGkYtCv ++ + + +++f v +g+ ++++Gs+ +L I ++ dD+G Y C ah06492 308 NSTIDV---GGQKFVVLPTGdvwsrpdGSYLNKLLITRARQDDAGMYICL 354 AtNsaGeaeasaeLtV<-* N G + sa+LtV ah06492 355 GANTMGYSFRSAFLTV 370 PF07686.7.ls: domain 3 of 3, from 261 to 371: score 18.3, E = 0.00071 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss ++ + +p tv Gg+ +++C+++ +d ah06492 261 PVLTGT-HPV------------NTTVDFGGTTSFQCKVR---SDV-- 289 ssgtfsiyWyrqqpp.............gkgpeliiisyysyystsegng ++ i+W + + + +++++++ + g++ + ++g ah06492 290 --KP-VIQWLK-RVEygaegrhnstidvGGQKFVVL-----------PTG 324 tvgerfkgrvtlsgnpskgdfsLtIsnlqlsDsGtYyCavsnsnelvfgg +v +r g++ + L I+ ++++D G+Y C n+ +++ ah06492 325 DVWSRPDGSYL----NK-----LLITRARQDDAGMYICLGANT-MGYSFR 364 gtrLtVl<-* LtVl ah06492 365 SAFLTVL 371 PF00047.15.ls: domain 3 of 3, from 276 to 355: score 16.6, E = 0.081 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G++ +++C v +++ + ++Wl+ +g + + +g+++ ah06492 276 GGTTSFQCKV--RSDVKPVIQWLKRVEyGAeGRHNSTIDVGGQKFVV 320 t...............sLtitnvtpeDggtYtCvv<-* ++++ ++++++ + L it+++++D+g Y C ah06492 321 LptgdvwsrpdgsylnKLLITRARQDDAGMYICLG 355 PF00047.15.fs: domain 3 of 3, from 276 to 355: score 14.7, E = 0.0028 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G++ +++C v +++ + ++Wl+ +g + + +g+++ ah06492 276 GGTTSFQCKV--RSDVKPVIQWLKRVEyGAeGRHNSTIDVGGQKFVV 320 t...............sLtitnvtpeDggtYtCvv<-* ++++ ++++++ + L it+++++D+g Y C ah06492 321 LptgdvwsrpdgsylnKLLITRARQDDAGMYICLG 355 //