hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-00242669/chunk_1/iprscan-20080807-00242669.nocrc
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Query sequence: ah06492
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00408                                                 166.6    2.5e-45   3
SM00409                                                 151.9    6.8e-41   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00409    1/3      51   132 ..     1    58 []    52.7  4.7e-11
SM00408    1/3      57   121 ..     1    56 []    59.0  6.3e-13
SM00409    2/3     172   254 ..     1    58 []    56.1  4.4e-12
SM00408    2/3     178   243 ..     1    56 []    79.6  3.9e-19
SM00409    3/3     268   371 ..     1    58 []    43.0    4e-08
SM00408    3/3     274   360 ..     1    56 []    28.1   0.0012

Alignments of top-scoring domains:
SM00409: domain 1 of 3, from 51 to 132: score 52.7, E = 4.7e-11
                   *->pp.vtvkeGesvtLtC.as.....titWy..................
                       p++++++G +v+L+C++++++++   W++++++ +++ ++ +  ++
     ah06492    51    VPrQVARLGRTVRLQCpVEgdpppLTMWTkdgrtihsgwsrfrvlpq 97   

                   .LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-*
                   +L +++v++eD+   G+Y+C at++ gs s   + tL Vl   
     ah06492    98 gLKVkQVEREDA---GVYVCKATngFGSLSV--NYTLVVL    132  

SM00408: domain 1 of 3, from 57 to 121: score 59.0, E = 6.3e-13
                   *->leGqsVtLtCpasgdpvpnItWlk.gkplp........sgstLtikn
                      + G++V+L+Cp++gdp p  +W+k+g  + ++ ++ +   + L++k 
     ah06492    57    RLGRTVRLQCPVEGDPPPLTMWTKdGRTIHsgwsrfrvLPQGLKVKQ 103  

                   vsleDsGlYtCvArNsvg<-*
                   v++eD+G+Y+C+A+N  g   
     ah06492   104 VEREDAGVYVCKATNGFG    121  

SM00409: domain 2 of 3, from 172 to 254: score 56.1, E = 4.4e-12
                   *->pp.vtvkeGesvtLtC.as.....titWy..................
                       + +   +G+sv+L+C as+++ + itW+++++  +++    +++++
     ah06492   172    RRvIARPVGSSVRLKCvASghprpDITWMkddqaltrpeaaeprkkk 218  

                   ..LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-*
                    +L ++n++peDs   G YtC++++++g + +  + ++ V    
     ah06492   219 wtLSLkNLRPEDS---GKYTCRVSnrAGAINA--TYKVDVI    254  

SM00408: domain 2 of 3, from 178 to 243: score 79.6, E = 3.9e-19
                   *->leGqsVtLtCpasgdpvpnItWlk.gkplp.........sgstLtik
                        G sV+L+C asg p p+ItW k+++ l +++  +++++++tL++k
     ah06492   178    PVGSSVRLKCVASGHPRPDITWMKdDQALTrpeaaeprkKKWTLSLK 224  

                   nvsleDsGlYtCvArNsvg<-*
                   n ++eDsG+YtC+++N++g   
     ah06492   225 NLRPEDSGKYTCRVSNRAG    243  

SM00409: domain 3 of 3, from 268 to 371: score 43.0, E = 4e-08
                   *->pp.vtvkeGesvtLtC.as.....titWy..................
                      p ++tv  G++ +++C++ ++ ++ i+W+++   +  ++++++ + +
     ah06492   268    PVnTTVDFGGTTSFQCkVRsdvkpVIQWLkrveygaegrhnstidvg 314  

                   .......................LtI.nvtpeDsesgGtYtCaat..sgs
                   +++    ++++  ++++++  ++L I++++ +D+   G Y C   ++ g 
     ah06492   315 gqkfvvlptgdvwsrpdgsylnkLLItRARQDDA---GMYICLGAntMGY 361  

                   asseqgttLtVl<-*
                    +   ++ LtVl   
     ah06492   362 SFR--SAFLTVL    371  

SM00408: domain 3 of 3, from 274 to 360: score 28.1, E = 0.0012
                   *->leGqsVtLtCpasgdpvpnItWlkgkplp..................
                        G++ +++C+++ d  p I+Wlk  +++ + +++++++ + ++++ 
     ah06492   274    DFGGTTSFQCKVRSDVKPVIQWLK--RVEygaegrhnstidvggqkf 318  

                   ...............sgstLtiknvsleDsGlYtCvArNsvg<-*
                      ++++  +++++++ + L i++++ +D+G+Y C++ N +g   
     ah06492   319 vvlptgdvwsrpdgsYLNKLLITRARQDDAGMYICLGANTMG    360  

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