# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Oaj00153.fasta.nr -Q aj00153.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 aj00153, 428 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6802534 sequences Expectation_n fit: rho(ln(x))= 6.4700+/-0.000208; mu= 6.0480+/- 0.012 mean_var=139.4986+/-26.915, 0's: 37 Z-trim: 80 B-trim: 220 in 3/64 Lambda= 0.108590 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|62087440|dbj|BAD92167.1| Shaw-related voltage-g ( 428) 2959 474.8 1.5e-131 gi|56159169|gb|AAV80432.1| voltage-gated potassium ( 729) 2942 472.4 1.4e-130 gi|119592250|gb|EAW71844.1| potassium voltage-gate ( 757) 2939 471.9 1.9e-130 gi|8488974|sp|Q14003|KCNC3_HUMAN Potassium voltage ( 757) 2939 471.9 1.9e-130 gi|56159171|gb|AAV80433.1| voltage-gated potassium ( 730) 2930 470.5 5e-130 gi|27818774|gb|AAO23561.1| Kv3.3d voltage gated po ( 758) 2922 469.2 1.2e-129 gi|27818772|gb|AAO23560.1| Kv3.3c voltage gated po ( 769) 2917 468.5 2.1e-129 gi|109125708|ref|XP_001113993.1| PREDICTED: simila ( 605) 2915 468.0 2.2e-129 gi|23320901|gb|AAN15930.1| Shaw type potassium cha ( 759) 2914 468.0 2.9e-129 gi|162318904|gb|AAI56433.1| Potassium voltage gate ( 769) 2912 467.7 3.7e-129 gi|3023499|sp|Q63959|KCNC3_MOUSE Potassium voltage ( 769) 2895 465.0 2.3e-128 gi|149056036|gb|EDM07467.1| potassium voltage gate ( 768) 2470 398.4 2.6e-108 gi|3023480|sp|Q01956|KCNC3_RAT Potassium voltage-g ( 889) 2470 398.5 2.9e-108 gi|205047|gb|AAA41470.1| potassium channel protein ( 679) 2463 397.3 5e-108 gi|148690792|gb|EDL22739.1| potassium voltage gate ( 680) 2458 396.5 8.7e-108 gi|817994|emb|CAA43209.1| Potassium channel protei ( 679) 2453 395.7 1.5e-107 gi|29936|emb|CAA77671.1| chromosome 19 potassium c ( 361) 2430 391.8 1.2e-106 gi|5817540|gb|AAD52813.1|AF132853_1 Kv3.1 potassiu ( 592) 1611 263.7 6.9e-68 gi|118091279|ref|XP_421008.2| PREDICTED: similar t ( 711) 1544 253.3 1.1e-64 gi|189530763|ref|XP_001920964.1| PREDICTED: simila ( 478) 1536 251.9 2.1e-64 gi|125812713|ref|XP_687495.2| PREDICTED: similar t ( 659) 1536 252.0 2.6e-64 gi|74188037|dbj|BAE37138.1| unnamed protein produc ( 479) 1528 250.7 4.9e-64 gi|126332095|ref|XP_001366654.1| PREDICTED: simila ( 585) 1529 250.9 5.1e-64 gi|116438|sp|P15388|KCNC1_MOUSE Potassium voltage- ( 511) 1528 250.7 5.1e-64 gi|60547266|gb|AAX23601.1| voltage-gated potassium ( 511) 1528 250.7 5.1e-64 gi|109107147|ref|XP_001087790.1| PREDICTED: simila ( 511) 1528 250.7 5.1e-64 gi|109107145|ref|XP_001087671.1| PREDICTED: simila ( 566) 1528 250.7 5.5e-64 gi|194213885|ref|XP_001918269.1| PREDICTED: potass ( 584) 1528 250.7 5.6e-64 gi|109107143|ref|XP_001087915.1| PREDICTED: simila ( 585) 1528 250.7 5.7e-64 gi|116439|sp|P25122|KCNC1_RAT Potassium voltage-ga ( 585) 1528 250.7 5.7e-64 gi|164451488|ref|NP_001106752.1| Shaw-related volt ( 585) 1528 250.7 5.7e-64 gi|1352085|sp|P48547|KCNC1_HUMAN Potassium voltage ( 511) 1527 250.5 5.7e-64 gi|76825377|gb|AAI07130.1| Potassium voltage-gated ( 511) 1527 250.5 5.7e-64 gi|149635587|ref|XP_001510646.1| PREDICTED: simila ( 528) 1527 250.5 5.9e-64 gi|114636411|ref|XP_001172695.1| PREDICTED: simila ( 566) 1527 250.6 6.2e-64 gi|119588831|gb|EAW68425.1| potassium voltage-gate ( 585) 1527 250.6 6.3e-64 gi|6959886|gb|AAF33249.1| Shaw-related potassium c ( 587) 1526 250.4 7e-64 gi|4960161|gb|AAD34618.1|AF153198_1 Kv3.1 [Canis f ( 585) 1522 249.8 1.1e-63 gi|189517292|ref|XP_692805.3| PREDICTED: similar t ( 456) 1520 249.4 1.1e-63 gi|84181089|gb|ABC54955.1| voltage-gated potassium ( 603) 1510 247.9 4.1e-63 gi|47208124|emb|CAF91031.1| unnamed protein produc ( 705) 1499 246.3 1.5e-62 gi|11878237|gb|AAG40860.1|AF308934_1 Kv3.3 potassi ( 651) 1493 245.3 2.7e-62 gi|190338404|gb|AAI63444.1| Similar to voltage-gat ( 605) 1492 245.1 2.9e-62 gi|47220492|emb|CAG05518.1| unnamed protein produc ( 471) 1488 244.4 3.7e-62 gi|73959912|ref|XP_547235.2| PREDICTED: similar to ( 642) 1477 242.8 1.5e-61 gi|194036529|ref|XP_001927532.1| PREDICTED: simila ( 485) 1474 242.2 1.7e-61 gi|134026344|gb|AAI35081.1| Zgc:162956 protein [Da ( 375) 1472 241.8 1.8e-61 gi|149708730|ref|XP_001496225.1| PREDICTED: simila ( 624) 1474 242.3 2.1e-61 gi|149708728|ref|XP_001496203.1| PREDICTED: potass ( 626) 1474 242.3 2.1e-61 gi|74192340|dbj|BAE34349.1| unnamed protein produc ( 413) 1471 241.7 2.2e-61 >>gi|62087440|dbj|BAD92167.1| Shaw-related voltage-gated (428 aa) initn: 2959 init1: 2959 opt: 2959 Z-score: 2517.0 bits: 474.8 E(): 1.5e-131 Smith-Waterman score: 2959; 100.000% identity (100.000% similar) in 428 aa overlap (1-428:1-428) 10 20 30 40 50 60 aj0015 LISITTFCLETHEGFIHISNKTVTQASPIPGAPPENITNVEVETEPFLTYVEGVCVVWFT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 LISITTFCLETHEGFIHISNKTVTQASPIPGAPPENITNVEVETEPFLTYVEGVCVVWFT 10 20 30 40 50 60 70 80 90 100 110 120 aj0015 FEFLMRITFCPDKVEFLKSSLNIIDCVAILPFYLEVGLSGLSSKAAKDVLGFLRVVRFVR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 FEFLMRITFCPDKVEFLKSSLNIIDCVAILPFYLEVGLSGLSSKAAKDVLGFLRVVRFVR 70 80 90 100 110 120 130 140 150 160 170 180 aj0015 ILRIFKLTRHFVGLRVLGHTLRASTNEFLLLIIFLALGVLIFATMIYYAERIGADPDDIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 ILRIFKLTRHFVGLRVLGHTLRASTNEFLLLIIFLALGVLIFATMIYYAERIGADPDDIL 130 140 150 160 170 180 190 200 210 220 230 240 aj0015 GSNHTYFKNIPIGFWWAVVTMTTLGYGDMYPKTWSGMLVGALCALAGVLTIAMPVPVIVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 GSNHTYFKNIPIGFWWAVVTMTTLGYGDMYPKTWSGMLVGALCALAGVLTIAMPVPVIVN 190 200 210 220 230 240 250 260 270 280 290 300 aj0015 NFGMYYSLAMAKQKLPKKKNKHIPRPPQPGSPNYCKPDPPPPPPPHPHHGSGGISPPPPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 NFGMYYSLAMAKQKLPKKKNKHIPRPPQPGSPNYCKPDPPPPPPPHPHHGSGGISPPPPI 250 260 270 280 290 300 310 320 330 340 350 360 aj0015 TPPSMGVTVAGAYPAGPHTHPGLLRGGAGGLGIMGLPPLPAPGEPCPLAQEEVIEINRAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 TPPSMGVTVAGAYPAGPHTHPGLLRGGAGGLGIMGLPPLPAPGEPCPLAQEEVIEINRAD 310 320 330 340 350 360 370 380 390 400 410 420 aj0015 PRPNGDPAAAALAHEDCPAIDQPAMSPEDKSPITPGSRGRYSRDRACFLLTDYAPSPDGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 PRPNGDPAAAALAHEDCPAIDQPAMSPEDKSPITPGSRGRYSRDRACFLLTDYAPSPDGS 370 380 390 400 410 420 aj0015 IRKALVTA :::::::: gi|620 IRKALVTA >>gi|56159169|gb|AAV80432.1| voltage-gated potassium cha (729 aa) initn: 2942 init1: 2942 opt: 2942 Z-score: 2499.7 bits: 472.4 E(): 1.4e-130 Smith-Waterman score: 2942; 99.065% identity (99.533% similar) in 428 aa overlap (1-428:302-729) 10 20 30 aj0015 LISITTFCLETHEGFIHISNKTVTQASPIP :::::::::::::::::::::::::::::: gi|561 RWQPRVWALFEDPYSSRAARYVAFASLFFILISITTFCLETHEGFIHISNKTVTQASPIP 280 290 300 310 320 330 40 50 60 70 80 90 aj0015 GAPPENITNVEVETEPFLTYVEGVCVVWFTFEFLMRITFCPDKVEFLKSSLNIIDCVAIL ::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::: gi|561 GAPPENITNVEVETEPFLTYVEGVCVVWFTFEFLMRVTFCPDKVEFLKSSLNIIDCVAIL 340 350 360 370 380 390 100 110 120 130 140 150 aj0015 PFYLEVGLSGLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|561 PFYLEVGLSGLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLL 400 410 420 430 440 450 160 170 180 190 200 210 aj0015 LIIFLALGVLIFATMIYYAERIGADPDDILGSNHTYFKNIPIGFWWAVVTMTTLGYGDMY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|561 LIIFLALGVLIFATMIYYAERIGADPDDILGSNHTYFKNIPIGFWWAVVTMTTLGYGDMY 460 470 480 490 500 510 220 230 240 250 260 270 aj0015 PKTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPKKKNKHIPRPPQPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|561 PKTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPKKKNKHIPRPPQPG 520 530 540 550 560 570 280 290 300 310 320 330 aj0015 SPNYCKPDPPPPPPPHPHHGSGGISPPPPITPPSMGVTVAGAYPAGPHTHPGLLRGGAGG :::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::: gi|561 SPNYCKPDPPPPPPPHPHHGSGGISPPPPITPPSMGVTVAGAYPPGPHTHPGLLRGGAGG 580 590 600 610 620 630 340 350 360 370 380 390 aj0015 LGIMGLPPLPAPGEPCPLAQEEVIEINRADPRPNGDPAAAALAHEDCPAIDQPAMSPEDK ::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::: gi|561 LGIMGLPPLPAPGEPCPLAQEEVIETNRADPRPNGDPAAAALAHEDCPAIDQPAMSPEDK 640 650 660 670 680 690 400 410 420 aj0015 SPITPGSRGRYSRDRACFLLTDYAPSPDGSIRKALVTA :::::::::::::::::::.:::::::::::::::::: gi|561 SPITPGSRGRYSRDRACFLVTDYAPSPDGSIRKALVTA 700 710 720 >>gi|119592250|gb|EAW71844.1| potassium voltage-gated ch (757 aa) initn: 2939 init1: 2939 opt: 2939 Z-score: 2496.9 bits: 471.9 E(): 1.9e-130 Smith-Waterman score: 2939; 100.000% identity (100.000% similar) in 424 aa overlap (1-424:301-724) 10 20 30 aj0015 LISITTFCLETHEGFIHISNKTVTQASPIP :::::::::::::::::::::::::::::: gi|119 RWQPRVWALFEDPYSSRAARYVAFASLFFILISITTFCLETHEGFIHISNKTVTQASPIP 280 290 300 310 320 330 40 50 60 70 80 90 aj0015 GAPPENITNVEVETEPFLTYVEGVCVVWFTFEFLMRITFCPDKVEFLKSSLNIIDCVAIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GAPPENITNVEVETEPFLTYVEGVCVVWFTFEFLMRITFCPDKVEFLKSSLNIIDCVAIL 340 350 360 370 380 390 100 110 120 130 140 150 aj0015 PFYLEVGLSGLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 PFYLEVGLSGLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLL 400 410 420 430 440 450 160 170 180 190 200 210 aj0015 LIIFLALGVLIFATMIYYAERIGADPDDILGSNHTYFKNIPIGFWWAVVTMTTLGYGDMY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LIIFLALGVLIFATMIYYAERIGADPDDILGSNHTYFKNIPIGFWWAVVTMTTLGYGDMY 460 470 480 490 500 510 220 230 240 250 260 270 aj0015 PKTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPKKKNKHIPRPPQPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 PKTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPKKKNKHIPRPPQPG 520 530 540 550 560 570 280 290 300 310 320 330 aj0015 SPNYCKPDPPPPPPPHPHHGSGGISPPPPITPPSMGVTVAGAYPAGPHTHPGLLRGGAGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SPNYCKPDPPPPPPPHPHHGSGGISPPPPITPPSMGVTVAGAYPAGPHTHPGLLRGGAGG 580 590 600 610 620 630 340 350 360 370 380 390 aj0015 LGIMGLPPLPAPGEPCPLAQEEVIEINRADPRPNGDPAAAALAHEDCPAIDQPAMSPEDK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LGIMGLPPLPAPGEPCPLAQEEVIEINRADPRPNGDPAAAALAHEDCPAIDQPAMSPEDK 640 650 660 670 680 690 400 410 420 aj0015 SPITPGSRGRYSRDRACFLLTDYAPSPDGSIRKALVTA :::::::::::::::::::::::::::::::::: gi|119 SPITPGSRGRYSRDRACFLLTDYAPSPDGSIRKATGAPPLPPQDWRKPGPPSFLPDLNAN 700 710 720 730 740 750 gi|119 AAAWISP >>gi|8488974|sp|Q14003|KCNC3_HUMAN Potassium voltage-gat (757 aa) initn: 2939 init1: 2939 opt: 2939 Z-score: 2496.9 bits: 471.9 E(): 1.9e-130 Smith-Waterman score: 2939; 100.000% identity (100.000% similar) in 424 aa overlap (1-424:301-724) 10 20 30 aj0015 LISITTFCLETHEGFIHISNKTVTQASPIP :::::::::::::::::::::::::::::: gi|848 RWQPRVWALFEDPYSSRAARYVAFASLFFILISITTFCLETHEGFIHISNKTVTQASPIP 280 290 300 310 320 330 40 50 60 70 80 90 aj0015 GAPPENITNVEVETEPFLTYVEGVCVVWFTFEFLMRITFCPDKVEFLKSSLNIIDCVAIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|848 GAPPENITNVEVETEPFLTYVEGVCVVWFTFEFLMRITFCPDKVEFLKSSLNIIDCVAIL 340 350 360 370 380 390 100 110 120 130 140 150 aj0015 PFYLEVGLSGLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|848 PFYLEVGLSGLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLL 400 410 420 430 440 450 160 170 180 190 200 210 aj0015 LIIFLALGVLIFATMIYYAERIGADPDDILGSNHTYFKNIPIGFWWAVVTMTTLGYGDMY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|848 LIIFLALGVLIFATMIYYAERIGADPDDILGSNHTYFKNIPIGFWWAVVTMTTLGYGDMY 460 470 480 490 500 510 220 230 240 250 260 270 aj0015 PKTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPKKKNKHIPRPPQPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|848 PKTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPKKKNKHIPRPPQPG 520 530 540 550 560 570 280 290 300 310 320 330 aj0015 SPNYCKPDPPPPPPPHPHHGSGGISPPPPITPPSMGVTVAGAYPAGPHTHPGLLRGGAGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|848 SPNYCKPDPPPPPPPHPHHGSGGISPPPPITPPSMGVTVAGAYPAGPHTHPGLLRGGAGG 580 590 600 610 620 630 340 350 360 370 380 390 aj0015 LGIMGLPPLPAPGEPCPLAQEEVIEINRADPRPNGDPAAAALAHEDCPAIDQPAMSPEDK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|848 LGIMGLPPLPAPGEPCPLAQEEVIEINRADPRPNGDPAAAALAHEDCPAIDQPAMSPEDK 640 650 660 670 680 690 400 410 420 aj0015 SPITPGSRGRYSRDRACFLLTDYAPSPDGSIRKALVTA :::::::::::::::::::::::::::::::::: gi|848 SPITPGSRGRYSRDRACFLLTDYAPSPDGSIRKATGAPPLPPQDWRKPGPPSFLPDLNAN 700 710 720 730 740 750 gi|848 AAAWISP >>gi|56159171|gb|AAV80433.1| voltage-gated potassium cha (730 aa) initn: 2463 init1: 2463 opt: 2930 Z-score: 2489.5 bits: 470.5 E(): 5e-130 Smith-Waterman score: 2930; 98.834% identity (99.301% similar) in 429 aa overlap (1-428:302-730) 10 20 30 aj0015 LISITTFCLETHEGFIHISNKTVTQASPIP :::::::::::::::::::::::::::::: gi|561 RWQPRVWALFEDPYSSRAARYVAFASLFFILISITTFCLETHEGFIHISNKTVTQASPIP 280 290 300 310 320 330 40 50 60 70 80 90 aj0015 GAPPENITNVEVETEPFLTYVEGVCVVWFTFEFLMRITFCPDKVEFLKSSLNIIDCVAIL ::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::: gi|561 GAPPENITNVEVETEPFLTYVEGVCVVWFTFEFLMRVTFCPDKVEFLKSSLNIIDCVAIL 340 350 360 370 380 390 100 110 120 130 140 150 aj0015 PFYLEVGLSGLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|561 PFYLEVGLSGLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLL 400 410 420 430 440 450 160 170 180 190 200 210 aj0015 LIIFLALGVLIFATMIYYAERIGADPDDILGSNHTYFKNIPIGFWWAVVTMTTLGYGDMY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|561 LIIFLALGVLIFATMIYYAERIGADPDDILGSNHTYFKNIPIGFWWAVVTMTTLGYGDMY 460 470 480 490 500 510 220 230 240 250 260 270 aj0015 PKTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPKKKNKHIPRPPQPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|561 PKTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPKKKNKHIPRPPQPG 520 530 540 550 560 570 280 290 300 310 320 330 aj0015 SPNYCKPDPPPPPPPHPHHGSGGISPPPPITPPSMGVTVAGAYPAGPHTHPGLLRGGAGG :::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::: gi|561 SPNYCKPDPPPPPPPHPHHGSGGISPPPPITPPSMGVTVAGAYPPGPHTHPGLLRGGAGG 580 590 600 610 620 630 340 350 360 370 380 aj0015 LGIMGLPPLPAPGEPCPLAQEEVIEINRA-DPRPNGDPAAAALAHEDCPAIDQPAMSPED ::::::::::::::::::::::::: ::: :::::::::::::::::::::::::::::: gi|561 LGIMGLPPLPAPGEPCPLAQEEVIETNRAVDPRPNGDPAAAALAHEDCPAIDQPAMSPED 640 650 660 670 680 690 390 400 410 420 aj0015 KSPITPGSRGRYSRDRACFLLTDYAPSPDGSIRKALVTA ::::::::::::::::::::.:::::::::::::::::: gi|561 KSPITPGSRGRYSRDRACFLVTDYAPSPDGSIRKALVTA 700 710 720 730 >>gi|27818774|gb|AAO23561.1| Kv3.3d voltage gated potass (758 aa) initn: 2922 init1: 2922 opt: 2922 Z-score: 2482.5 bits: 469.2 E(): 1.2e-129 Smith-Waterman score: 2922; 99.057% identity (99.528% similar) in 424 aa overlap (1-424:302-725) 10 20 30 aj0015 LISITTFCLETHEGFIHISNKTVTQASPIP :::::::::::::::::::::::::::::: gi|278 RWQPRVWALFEDPYSSRAARYVAFASLFFILISITTFCLETHEGFIHISNKTVTQASPIP 280 290 300 310 320 330 40 50 60 70 80 90 aj0015 GAPPENITNVEVETEPFLTYVEGVCVVWFTFEFLMRITFCPDKVEFLKSSLNIIDCVAIL ::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::: gi|278 GAPPENITNVEVETEPFLTYVEGVCVVWFTFEFLMRVTFCPDKVEFLKSSLNIIDCVAIL 340 350 360 370 380 390 100 110 120 130 140 150 aj0015 PFYLEVGLSGLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|278 PFYLEVGLSGLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLL 400 410 420 430 440 450 160 170 180 190 200 210 aj0015 LIIFLALGVLIFATMIYYAERIGADPDDILGSNHTYFKNIPIGFWWAVVTMTTLGYGDMY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|278 LIIFLALGVLIFATMIYYAERIGADPDDILGSNHTYFKNIPIGFWWAVVTMTTLGYGDMY 460 470 480 490 500 510 220 230 240 250 260 270 aj0015 PKTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPKKKNKHIPRPPQPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|278 PKTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPKKKNKHIPRPPQPG 520 530 540 550 560 570 280 290 300 310 320 330 aj0015 SPNYCKPDPPPPPPPHPHHGSGGISPPPPITPPSMGVTVAGAYPAGPHTHPGLLRGGAGG :::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::: gi|278 SPNYCKPDPPPPPPPHPHHGSGGISPPPPITPPSMGVTVAGAYPPGPHTHPGLLRGGAGG 580 590 600 610 620 630 340 350 360 370 380 390 aj0015 LGIMGLPPLPAPGEPCPLAQEEVIEINRADPRPNGDPAAAALAHEDCPAIDQPAMSPEDK ::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::: gi|278 LGIMGLPPLPAPGEPCPLAQEEVIETNRADPRPNGDPAAAALAHEDCPAIDQPAMSPEDK 640 650 660 670 680 690 400 410 420 aj0015 SPITPGSRGRYSRDRACFLLTDYAPSPDGSIRKALVTA :::::::::::::::::::.:::::::::::::: gi|278 SPITPGSRGRYSRDRACFLVTDYAPSPDGSIRKATGAPPLPPPCWRKPGPPSFLPDLNAN 700 710 720 730 740 750 gi|278 AAAWISP >>gi|27818772|gb|AAO23560.1| Kv3.3c voltage gated potass (769 aa) initn: 2917 init1: 2917 opt: 2917 Z-score: 2478.2 bits: 468.5 E(): 2.1e-129 Smith-Waterman score: 2917; 99.054% identity (99.527% similar) in 423 aa overlap (1-423:302-724) 10 20 30 aj0015 LISITTFCLETHEGFIHISNKTVTQASPIP :::::::::::::::::::::::::::::: gi|278 RWQPRVWALFEDPYSSRAARYVAFASLFFILISITTFCLETHEGFIHISNKTVTQASPIP 280 290 300 310 320 330 40 50 60 70 80 90 aj0015 GAPPENITNVEVETEPFLTYVEGVCVVWFTFEFLMRITFCPDKVEFLKSSLNIIDCVAIL ::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::: gi|278 GAPPENITNVEVETEPFLTYVEGVCVVWFTFEFLMRVTFCPDKVEFLKSSLNIIDCVAIL 340 350 360 370 380 390 100 110 120 130 140 150 aj0015 PFYLEVGLSGLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|278 PFYLEVGLSGLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLL 400 410 420 430 440 450 160 170 180 190 200 210 aj0015 LIIFLALGVLIFATMIYYAERIGADPDDILGSNHTYFKNIPIGFWWAVVTMTTLGYGDMY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|278 LIIFLALGVLIFATMIYYAERIGADPDDILGSNHTYFKNIPIGFWWAVVTMTTLGYGDMY 460 470 480 490 500 510 220 230 240 250 260 270 aj0015 PKTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPKKKNKHIPRPPQPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|278 PKTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPKKKNKHIPRPPQPG 520 530 540 550 560 570 280 290 300 310 320 330 aj0015 SPNYCKPDPPPPPPPHPHHGSGGISPPPPITPPSMGVTVAGAYPAGPHTHPGLLRGGAGG :::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::: gi|278 SPNYCKPDPPPPPPPHPHHGSGGISPPPPITPPSMGVTVAGAYPPGPHTHPGLLRGGAGG 580 590 600 610 620 630 340 350 360 370 380 390 aj0015 LGIMGLPPLPAPGEPCPLAQEEVIEINRADPRPNGDPAAAALAHEDCPAIDQPAMSPEDK ::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::: gi|278 LGIMGLPPLPAPGEPCPLAQEEVIETNRADPRPNGDPAAAALAHEDCPAIDQPAMSPEDK 640 650 660 670 680 690 400 410 420 aj0015 SPITPGSRGRYSRDRACFLLTDYAPSPDGSIRKALVTA :::::::::::::::::::.::::::::::::: gi|278 SPITPGSRGRYSRDRACFLVTDYAPSPDGSIRKGYEKSRSLSSIVGLSGVSLRLAPLATP 700 710 720 730 740 750 gi|278 PGSPRATRRAPPTLPSIL 760 >>gi|109125708|ref|XP_001113993.1| PREDICTED: similar to (605 aa) initn: 2915 init1: 2915 opt: 2915 Z-score: 2477.8 bits: 468.0 E(): 2.2e-129 Smith-Waterman score: 2915; 99.527% identity (99.527% similar) in 423 aa overlap (1-423:138-560) 10 20 30 aj0015 LISITTFCLETHEGFIHISNKTVTQASPIP :::::::::::::::::::::::::::::: gi|109 ALCLPEPRTAQGAGTARSEAYVAFASLFFILISITTFCLETHEGFIHISNKTVTQASPIP 110 120 130 140 150 160 40 50 60 70 80 90 aj0015 GAPPENITNVEVETEPFLTYVEGVCVVWFTFEFLMRITFCPDKVEFLKSSLNIIDCVAIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 GAPPENITNVEVETEPFLTYVEGVCVVWFTFEFLMRITFCPDKVEFLKSSLNIIDCVAIL 170 180 190 200 210 220 100 110 120 130 140 150 aj0015 PFYLEVGLSGLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 PFYLEVGLSGLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLL 230 240 250 260 270 280 160 170 180 190 200 210 aj0015 LIIFLALGVLIFATMIYYAERIGADPDDILGSNHTYFKNIPIGFWWAVVTMTTLGYGDMY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LIIFLALGVLIFATMIYYAERIGADPDDILGSNHTYFKNIPIGFWWAVVTMTTLGYGDMY 290 300 310 320 330 340 220 230 240 250 260 270 aj0015 PKTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPKKKNKHIPRPPQPG ::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 PKTWSKKLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPKKKNKHIPRPPQPG 350 360 370 380 390 400 280 290 300 310 320 330 aj0015 SPNYCKPDPPPPPPPHPHHGSGGISPPPPITPPSMGVTVAGAYPAGPHTHPGLLRGGAGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 SPNYCKPDPPPPPPPHPHHGSGGISPPPPITPPSMGVTVAGAYPAGPHTHPGLLRGGAGG 410 420 430 440 450 460 340 350 360 370 380 390 aj0015 LGIMGLPPLPAPGEPCPLAQEEVIEINRADPRPNGDPAAAALAHEDCPAIDQPAMSPEDK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LGIMGLPPLPAPGEPCPLAQEEVIEINRADPRPNGDPAAAALAHEDCPAIDQPAMSPEDK 470 480 490 500 510 520 400 410 420 aj0015 SPITPGSRGRYSRDRACFLLTDYAPSPDGSIRKALVTA ::::::::::::::::::::::::::::::::: gi|109 SPITPGSRGRYSRDRACFLLTDYAPSPDGSIRKGYEKSRSLSSIAGLSGVSLRLAPLATP 530 540 550 560 570 580 gi|109 PGSPRAARRAPPTLPSIL 590 600 >>gi|23320901|gb|AAN15930.1| Shaw type potassium channel (759 aa) initn: 2914 init1: 2914 opt: 2914 Z-score: 2475.8 bits: 468.0 E(): 2.9e-129 Smith-Waterman score: 2914; 98.821% identity (99.528% similar) in 424 aa overlap (1-424:303-726) 10 20 30 aj0015 LISITTFCLETHEGFIHISNKTVTQASPIP :::::::::::::::::::::::::::::: gi|233 RWQPRVWALFEDPYSSRAARYVAFASLFFILISITTFCLETHEGFIHISNKTVTQASPIP 280 290 300 310 320 330 40 50 60 70 80 90 aj0015 GAPPENITNVEVETEPFLTYVEGVCVVWFTFEFLMRITFCPDKVEFLKSSLNIIDCVAIL ::::::.:::::::::::::::::::::::::::::.:::::: :::::::::::::::: gi|233 GAPPENVTNVEVETEPFLTYVEGVCVVWFTFEFLMRVTFCPDKGEFLKSSLNIIDCVAIL 340 350 360 370 380 390 100 110 120 130 140 150 aj0015 PFYLEVGLSGLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLL ::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|233 PFYLEVALSGLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLL 400 410 420 430 440 450 160 170 180 190 200 210 aj0015 LIIFLALGVLIFATMIYYAERIGADPDDILGSNHTYFKNIPIGFWWAVVTMTTLGYGDMY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|233 LIIFLALGVLIFATMIYYAERIGADPDDILGSNHTYFKNIPIGFWWAVVTMTTLGYGDMY 460 470 480 490 500 510 220 230 240 250 260 270 aj0015 PKTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPKKKNKHIPRPPQPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|233 PKTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPKKKNKHIPRPPQPG 520 530 540 550 560 570 280 290 300 310 320 330 aj0015 SPNYCKPDPPPPPPPHPHHGSGGISPPPPITPPSMGVTVAGAYPAGPHTHPGLLRGGAGG :::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::: gi|233 SPNYCKPDPPPPPPPHPHHGSGGISPPPPITPPSMGVTVAGAYPPGPHTHPGLLRGGAGG 580 590 600 610 620 630 340 350 360 370 380 390 aj0015 LGIMGLPPLPAPGEPCPLAQEEVIEINRADPRPNGDPAAAALAHEDCPAIDQPAMSPEDK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|233 LGIMGLPPLPAPGEPCPLAQEEVIEINRADPRPNGDPAAAALAHEDCPAIDQPAMSPEDK 640 650 660 670 680 690 400 410 420 aj0015 SPITPGSRGRYSRDRACFLLTDYAPSPDGSIRKALVTA :::::::::::::::::::::::::::::::::: gi|233 SPITPGSRGRYSRDRACFLLTDYAPSPDGSIRKATGAPPLPPPDWRKPGPPSFLPDLNTN 700 710 720 730 740 750 gi|233 AAGWISP >>gi|162318904|gb|AAI56433.1| Potassium voltage gated ch (769 aa) initn: 2912 init1: 2912 opt: 2912 Z-score: 2474.0 bits: 467.7 E(): 3.7e-129 Smith-Waterman score: 2912; 98.818% identity (99.527% similar) in 423 aa overlap (1-423:302-724) 10 20 30 aj0015 LISITTFCLETHEGFIHISNKTVTQASPIP :::::::::::::::::::::::::::::: gi|162 RWQPRVWALFEDPYSSRAARYVAFASLFFILISITTFCLETHEGFIHISNKTVTQASPIP 280 290 300 310 320 330 40 50 60 70 80 90 aj0015 GAPPENITNVEVETEPFLTYVEGVCVVWFTFEFLMRITFCPDKVEFLKSSLNIIDCVAIL ::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::: gi|162 GAPPENITNVEVETEPFLTYVEGVCVVWFTFEFLMRVTFCPDKVEFLKSSLNIIDCVAIL 340 350 360 370 380 390 100 110 120 130 140 150 aj0015 PFYLEVGLSGLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|162 PFYLEVGLSGLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLL 400 410 420 430 440 450 160 170 180 190 200 210 aj0015 LIIFLALGVLIFATMIYYAERIGADPDDILGSNHTYFKNIPIGFWWAVVTMTTLGYGDMY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|162 LIIFLALGVLIFATMIYYAERIGADPDDILGSNHTYFKNIPIGFWWAVVTMTTLGYGDMY 460 470 480 490 500 510 220 230 240 250 260 270 aj0015 PKTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPKKKNKHIPRPPQPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|162 PKTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPKKKNKHIPRPPQPG 520 530 540 550 560 570 280 290 300 310 320 330 aj0015 SPNYCKPDPPPPPPPHPHHGSGGISPPPPITPPSMGVTVAGAYPAGPHTHPGLLRGGAGG :::::::::::::::::::::::::::::::::::::.:::::: ::::::::::::::: gi|162 SPNYCKPDPPPPPPPHPHHGSGGISPPPPITPPSMGVNVAGAYPPGPHTHPGLLRGGAGG 580 590 600 610 620 630 340 350 360 370 380 390 aj0015 LGIMGLPPLPAPGEPCPLAQEEVIEINRADPRPNGDPAAAALAHEDCPAIDQPAMSPEDK ::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::: gi|162 LGIMGLPPLPAPGEPCPLAQEEVIETNRADPRPNGDPAAAALAHEDCPAIDQPAMSPEDK 640 650 660 670 680 690 400 410 420 aj0015 SPITPGSRGRYSRDRACFLLTDYAPSPDGSIRKALVTA :::::::::::::::::::.::::::::::::: gi|162 SPITPGSRGRYSRDRACFLVTDYAPSPDGSIRKGYEKSRSLSSIVGLSGVSLRLAPLATP 700 710 720 730 740 750 gi|162 PGSPRATRRAPPTLPSIL 760 428 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Thu Aug 7 00:38:53 2008 done: Thu Aug 7 00:41:17 2008 Total Scan time: 838.520 Total Display time: 0.130 Function used was FASTA [version 34.26.5 April 26, 2007]