hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-00411851/chunk_1/iprscan-20080807-00411851.nocrc
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Query sequence: aj00153
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF00520.21.ls Ion transport protein                       149.7      7e-42   1
PF00520.21.fs Ion transport protein                       147.9    2.5e-41   1
PF07885.6.fs Ion channel                                  41.6    1.1e-11   1
PF07885.6.ls Ion channel                                  43.6    6.3e-10   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF00520.21.fs   1/1      50   238 ..     1   224 []   147.9  2.5e-41
PF00520.21.ls   1/1      50   238 ..     1   224 []   149.7    7e-42
PF07885.6.fs   1/1     154   248 ..     1    81 []    41.6  1.1e-11
PF07885.6.ls   1/1     154   248 ..     1    81 []    43.6  6.3e-10

Alignments of top-scoring domains:
PF00520.21.fs: domain 1 of 1, from 50 to 238: score 147.9, E = 2.5e-41
                   *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl
                      +++ v++v+Ft+E+l++i  ++ k        +l+s  Ni+D++++l
     aj00153    50    YVEGVCVVWFTFEFLMRITFCPDK------VEFLKSSLNIIDCVAIL 90   

                   pslislilsllgggsegdlyvreskdstlse.gspgllsvlrllRllRvL
                   p+++++ ls l                   ++   ++l++lr++R++R L
     aj00153    91 PFYLEVGLSGLS------------------SkAAKDVLGFLRVVRFVRIL 122  

                   RllrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaii
                   R+++l+r + g     lr+l    +l  s    l ++++l+l ++iFa +
     aj00153   123 RIFKLTRHFVG-----LRVL--GHTLRASTNEFLLLIIFLALGVLIFATM 165  

                   gvqlFggklnkccnpingntnFdsfgnaflwlFqtmTteGwgdvmpdtla
                    ++      ++++    ++t F +++ +f+w+ +tmTt G+gd++p+   
     aj00153   166 IYYAERIGADPDDILGSNHTYFKNIPIGFWWAVVTMTTLGYGDMYPK--- 212  

                   gtvlgyiyfvsfiilgsflllNLfiavi<-*
                    t+ g++++ +++ l+++l+++++++vi   
     aj00153   213 -TWSGMLVG-ALCALAGVLTIAMPVPVI    238  

PF00520.21.ls: domain 1 of 1, from 50 to 238: score 149.7, E = 7e-42
                   *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl
                      +++ v++v+Ft+E+l++i  ++ k        +l+s  Ni+D++++l
     aj00153    50    YVEGVCVVWFTFEFLMRITFCPDK------VEFLKSSLNIIDCVAIL 90   

                   pslislilsllgggsegdlyvreskdstlse.gspgllsvlrllRllRvL
                   p+++++ ls l                   ++   ++l++lr++R++R L
     aj00153    91 PFYLEVGLSGLS------------------SkAAKDVLGFLRVVRFVRIL 122  

                   RllrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaii
                   R+++l+r + g     lr+l    +l  s    l ++++l+l ++iFa +
     aj00153   123 RIFKLTRHFVG-----LRVL--GHTLRASTNEFLLLIIFLALGVLIFATM 165  

                   gvqlFggklnkccnpingntnFdsfgnaflwlFqtmTteGwgdvmpdtla
                    ++      ++++    ++t F +++ +f+w+ +tmTt G+gd++p+   
     aj00153   166 IYYAERIGADPDDILGSNHTYFKNIPIGFWWAVVTMTTLGYGDMYPK--- 212  

                   gtvlgyiyfvsfiilgsflllNLfiavi<-*
                    t+ g++++ +++ l+++l+++++++vi   
     aj00153   213 -TWSGMLVG-ALCALAGVLTIAMPVPVI    238  

PF07885.6.fs: domain 1 of 1, from 154 to 248: score 41.6, E = 1.1e-11
                   *->iilllvlifgtvyyal.............epeegwewsfldalYFsf
                      ++ l vlif+t +y+ ++ + ++++  ++++  +   +   ++++++
     aj00153   154    FLALGVLIFATMIYYAerigadpddilgsNHTYFK--NIPIGFWWAV 198  

                   vTlTTiGYGDivPlstdaGRlftivyiliGiplfalll....avlgrflt
                   vT+TT GYGD++P  t  G l+  + +l G+  +a+ ++   +++g + +
     aj00153   199 VTMTTLGYGDMYPK-TWSGMLVGALCALAGVLTIAMPVpvivNNFGMYYS 247  

                   e<-*
                       
     aj00153   248 L    248  

PF07885.6.ls: domain 1 of 1, from 154 to 248: score 43.6, E = 6.3e-10
                   *->iilllvlifgtvyyal.............epeegwewsfldalYFsf
                      ++ l vlif+t +y+ ++ + ++++  ++++  +   +   ++++++
     aj00153   154    FLALGVLIFATMIYYAerigadpddilgsNHTYFK--NIPIGFWWAV 198  

                   vTlTTiGYGDivPlstdaGRlftivyiliGiplfalll....avlgrflt
                   vT+TT GYGD++P  t  G l+  + +l G+  +a+ ++   +++g + +
     aj00153   199 VTMTTLGYGDMYPK-TWSGMLVGALCALAGVLTIAMPVpvivNNFGMYYS 247  

                   e<-*
                       
     aj00153   248 L    248  

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