hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-00465458/chunk_1/iprscan-20080807-00465458.nocrc
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Query sequence: aj00183
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF00648.11.ls Calpain family cysteine protease           454.4   1.3e-133   1
PF00648.11.fs Calpain family cysteine protease           453.6   2.4e-133   1
PF00641.9.ls Zn-finger in Ran binding protein and oth   112.8    9.2e-31   5
PF00641.9.fs Zn-finger in Ran binding protein and oth   105.0    2.1e-28   6

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF00641.9.ls   3/5     166   195 ..     1    32 []    26.8  6.9e-05
PF00641.9.fs   3/6     166   195 ..     1    32 []    24.9  9.5e-06
PF00641.9.fs   6/6     435   464 ..     1    32 []    33.5  4.7e-08
PF00641.9.ls   5/5     435   464 ..     1    32 []    35.4  1.8e-07
PF00648.11.fs   1/1     511   816 ..     1   370 []   453.6 2.4e-133
PF00648.11.ls   1/1     511   816 ..     1   370 []   454.4 1.3e-133

Alignments of top-scoring domains:
PF00641.9.ls: domain 3 of 5, from 166 to 195: score 26.8, E = 6.9e-05
                   *->ragsdWdCissClvqNfatstkCvaCqapkps<-*
                      + g  W C + C+++N + ++ C  C++p+     
     aj00183   166    PRG-GWAC-PRCTLHNTPVASSCSVCGGPRRL    195  

PF00641.9.fs: domain 3 of 6, from 166 to 195: score 24.9, E = 9.5e-06
                   *->ragsdWdCissClvqNfatstkCvaCqapkps<-*
                      + g  W C + C+++N + ++ C  C++p+     
     aj00183   166    PRG-GWAC-PRCTLHNTPVASSCSVCGGPRRL    195  

PF00641.9.fs: domain 6 of 6, from 435 to 464: score 33.5, E = 4.7e-08
                   *->ragsdWdCissClvqNfatstkCvaCqapkps<-*
                      r g +W C ++C++ N +++ +C aC +p      
     aj00183   435    RPG-QWAC-PACTLLNALRAKHCAACHTPQLL    464  

PF00641.9.ls: domain 5 of 5, from 435 to 464: score 35.4, E = 1.8e-07
                   *->ragsdWdCissClvqNfatstkCvaCqapkps<-*
                      r g +W C ++C++ N +++ +C aC +p      
     aj00183   435    RPG-QWAC-PACTLLNALRAKHCAACHTPQLL    464  

PF00648.11.fs: domain 1 of 1, from 511 to 816: score 453.6, E = 2.4e-133
                   *->LFeDPsFPaapkSLgykplfpassktrgieWKRPhEInenPqFivgG
                       F+D+sFP+ p+S g+ p+++ s   r+ +W+RP EIn+   F    
     aj00183   511    -FVDDSFPPGPESVGF-PAGD-SVQQRVRQWLRPQEINCS-VFRDHR 553  

                   AsPPWAvFRTPLPsDIcQGaLGDCWLLAAiAsLTlneeLlfrVvPhdQsf
                   A+  W vF T  PsDI QG LG+CW+L+A+A+L+++++L+ rV  +++s+
     aj00183   554 AT--WSVFHTLRPSDILQGLLGNCWFLSALAVLAERPDLVERVM-VTRSL 600  

                   qeneYAGIFhFrfWqyGeWVdVvvDDrLPtDkdGentLvFvhSaernEFW
                   +     G++++r++++G W++V+vDD LP+D  G   L+F++ a r+++W
     aj00183   601 CAE---GAYQVRLCKDGTWTTVLVDDMLPCDEAGC--LLFSQ-AQRKQLW 644  

                   SALLEKAYAKlhGcYEALsGGsttEamEDfTGGvcEsyeLkqApsDmYki
                   +AL+EKA AKlhG+Y AL  G+++E+++++TG++cEs+ L q +s     
     aj00183   645 VALIEKALAKLHGSYFALQAGRAIEGLATLTGAPCESLAL-QLSS----- 688  

                   mkkaieRGsLmGCsiDDGtnmtYlpsPSednLfkDLiiakalergsnsLL
                                           + P e+  ++DLi+ak+l++      
     aj00183   689 ------------------------TNPREEPVDTDLIWAKMLSSKE---- 710  

                   rDsDLDvRfLmgcSidissp.vdmEaktfkGLvkgHAYSVTgvkevnyvt
                           fLmg+S+++++++vd  a+   GL+++HAYS+++v +v++  
     aj00183   711 ------AGFLMGASCGGGNMkVDDSAYESLGLRPRHAYSILDVRDVQG-- 752  

                   PnrGekqkLiRlRNPWGdevEWnGaWSDgSpeWreidederaeLqlkfee
                          +L+RlRNPWG   +WnG+WSD +p W      +r eL++++ +
     aj00183   753 ------TRLLRLRNPWG-RFSWNGSWSDEWPHWP---GHLRGELMPHGSS 792  

                   DGEFWMSFeDFlnhFsRlEICnLt<-*
                   +G+FWM + DF+++F+ ++IC++    
     aj00183   793 EGVFWMEYGDFVRYFDSVDICKVH    816  

PF00648.11.ls: domain 1 of 1, from 511 to 816: score 454.4, E = 1.3e-133
                   *->LFeDPsFPaapkSLgykplfpassktrgieWKRPhEInenPqFivgG
                       F+D+sFP+ p+S g+ p+++ s   r+ +W+RP EIn+   F    
     aj00183   511    -FVDDSFPPGPESVGF-PAGD-SVQQRVRQWLRPQEINCS-VFRDHR 553  

                   AsPPWAvFRTPLPsDIcQGaLGDCWLLAAiAsLTlneeLlfrVvPhdQsf
                   A+  W vF T  PsDI QG LG+CW+L+A+A+L+++++L+ rV  +++s+
     aj00183   554 AT--WSVFHTLRPSDILQGLLGNCWFLSALAVLAERPDLVERVM-VTRSL 600  

                   qeneYAGIFhFrfWqyGeWVdVvvDDrLPtDkdGentLvFvhSaernEFW
                   +     G++++r++++G W++V+vDD LP+D  G   L+F++ a r+++W
     aj00183   601 CAE---GAYQVRLCKDGTWTTVLVDDMLPCDEAGC--LLFSQ-AQRKQLW 644  

                   SALLEKAYAKlhGcYEALsGGsttEamEDfTGGvcEsyeLkqApsDmYki
                   +AL+EKA AKlhG+Y AL  G+++E+++++TG++cEs+ L q +s     
     aj00183   645 VALIEKALAKLHGSYFALQAGRAIEGLATLTGAPCESLAL-QLSS----- 688  

                   mkkaieRGsLmGCsiDDGtnmtYlpsPSednLfkDLiiakalergsnsLL
                                           + P e+  ++DLi+ak+l++      
     aj00183   689 ------------------------TNPREEPVDTDLIWAKMLSSKE---- 710  

                   rDsDLDvRfLmgcSidissp.vdmEaktfkGLvkgHAYSVTgvkevnyvt
                           fLmg+S+++++++vd  a+   GL+++HAYS+++v +v++  
     aj00183   711 ------AGFLMGASCGGGNMkVDDSAYESLGLRPRHAYSILDVRDVQG-- 752  

                   PnrGekqkLiRlRNPWGdevEWnGaWSDgSpeWreidederaeLqlkfee
                          +L+RlRNPWG   +WnG+WSD +p W      +r eL++++ +
     aj00183   753 ------TRLLRLRNPWG-RFSWNGSWSDEWPHWP---GHLRGELMPHGSS 792  

                   DGEFWMSFeDFlnhFsRlEICnLt<-*
                   +G+FWM + DF+++F+ ++IC++    
     aj00183   793 EGVFWMEYGDFVRYFDSVDICKVH    816  

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