hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-00525605/chunk_1/iprscan-20080807-00525605.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: aj00184 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02181.13.ls Formin Homology 2 Domain 456.7 2.7e-134 1 PF02181.13.fs Formin Homology 2 Domain 454.7 1.1e-133 1 PF06346.3.fs Formin Homology Region 1 299.8 4.7e-87 4 PF06346.3.ls Formin Homology Region 1 256.1 6.5e-74 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF06346.3.ls 1/3 421 584 .. 1 159 [] 36.8 6.8e-08 PF06346.3.fs 2/4 520 618 .. 1 108 [. 85.6 1.4e-22 PF06346.3.ls 2/3 586 718 .. 1 159 [] 100.3 5.4e-27 PF06346.3.fs 3/4 619 717 .. 1 108 [. 91.3 2.8e-24 PF06346.3.fs 4/4 718 868 .. 1 159 [] 119.5 8.6e-33 PF06346.3.ls 3/3 719 868 .. 1 159 [] 119.0 1.2e-32 PF02181.13.fs 1/1 894 1283 .. 1 413 [] 454.7 1.1e-133 PF02181.13.ls 1/1 894 1283 .. 1 413 [] 456.7 2.7e-134 Alignments of top-scoring domains: PF06346.3.ls: domain 1 of 3, from 421 to 584: score 36.8, E = 6.8e-08 *->PPpPPLP...GvaiPPpP...................PlppgvaiPP PPpP L + G + P + ++++ +++ +++++++ ++ iP aj00184 421 PPPPSLLwsaGQGQPGSQpphsistefqtshehsvssAFKNSCNIPS 467 pPPLPGGvgipPpPpLpGdaaiPPPPPLPgvagiPpPppLPGavaiPPPP pPPLP + + + p G PPPPPLPg p LP +aiP PP aj00184 468 PPPLP-CTESSSSMPGLG-MVPPPPPPLPGM----TVPTLPS-TAIPQPP 510 PLPGaagi.PPPPPLPGgagiiPPPPaLPGevaipPPPPLpgGmgviPPa PL G+ ++PPPPPLP gagi PPPP+LPG ++i P PPLp G+g+ PP+ aj00184 511 PLQGTEMLpPPPPPLP-GAGI-PPPPPLPG-AGILPLPPLP-GAGI-PPP 555 PPlPGaagiPPPPlgpgipPPpsfgvgvstlPalP<-* PPlPGa +iPPPP++pg + P + ++lP + aj00184 556 PPLPGA-AIPPPPPLPGAGIPLP-----PPLPGAG 584 PF06346.3.fs: domain 2 of 4, from 520 to 618: score 85.6, E = 1.4e-22 *->PPpPPLPGvaiPPpPPlppgvaiPPpPPLPGGvgipPpPpLpGdaai PPpPPLPG++iPPpPPl pg++i P PPLP G+gipPpPpLpG aai aj00184 520 PPPPPLPGAGIPPPPPL-PGAGILPLPPLP-GAGIPPPPPLPG-AAI 563 PPPPPLPgvagiPpPppLPGavaiPPPPPLPGaagiPPPPPLPGgagiiP PPPPPLPg+ giP PppLPG ++iPPPPPLPG agiPPPPPLP gagi P aj00184 564 PPPPPLPGA-GIPLPPPLPG-AGIPPPPPLPG-AGIPPPPPLP-GAGI-P 608 PPPaLPGevai<-* PPP+LPG ++i aj00184 609 PPPPLPG-AGI 618 PF06346.3.ls: domain 2 of 3, from 586 to 718: score 100.3, E = 5.4e-27 *->PPpPPLPGvaiPPpPPlppgvaiPPpPPLPGGvgipPpPpLpGdaai PPpPPLPG++iPPpPPl pg++iPPpPPLP G+gipPpPpLpG a+i aj00184 586 PPPPPLPGAGIPPPPPL-PGAGIPPPPPLP-GAGIPPPPPLPG-AGI 629 PPPPPLPgvagiPpPppLPGavaiPPPPPLPGaagiPPPPPLPGgagiiP PPPPPLPg+ giPpPppLPG ++iPPPPPLPG agiPPPPPLP gagi P aj00184 630 PPPPPLPGA-GIPPPPPLPG-AGIPPPPPLPG-AGIPPPPPLP-GAGI-P 674 PPPaLPGevaipPPPPLpgGmgviPPaPPlPGaagiPPPPlgpgipPPps PPP+LPG ++ipPPPPLp G+g+ PP+PPlPGa giPPPP++pg++ aj00184 675 PPPPLPG-AGIPPPPPLP-GAGI-PPPPPLPGA-GIPPPPPLPGVG---- 716 fgvgvstlPalP<-* +P aj00184 717 ----------IP 718 PF06346.3.fs: domain 3 of 4, from 619 to 717: score 91.3, E = 2.8e-24 *->PPpPPLPGvaiPPpPPlppgvaiPPpPPLPGGvgipPpPpLpGdaai PPpPPLPG++iPPpPPl pg++iPPpPPLP G+gipPpPpLpG a+i aj00184 619 PPPPPLPGAGIPPPPPL-PGAGIPPPPPLP-GAGIPPPPPLPG-AGI 662 PPPPPLPgvagiPpPppLPGavaiPPPPPLPGaagiPPPPPLPGgagiiP PPPPPLPg+ giPpPppLPG ++iPPPPPLPG agiPPPPPLP gagi P aj00184 663 PPPPPLPGA-GIPPPPPLPG-AGIPPPPPLPG-AGIPPPPPLP-GAGI-P 707 PPPaLPGevai<-* PPP+LPG v+i aj00184 708 PPPPLPG-VGI 717 PF06346.3.fs: domain 4 of 4, from 718 to 868: score 119.5, E = 8.6e-33 *->PPpPPLPGvaiPPpPPlppgvaiPPpPPLPGGvgipPpPpLpGdaai PPpPPLPG++iPPpPPl pg++iPPpPPLP G+gipPpPpLpG ++i aj00184 718 PPPPPLPGAGIPPPPPL-PGAGIPPPPPLP-GAGIPPPPPLPG-VGI 761 PPPPPLPgvagiPpPppLPGavaiPPPPPLPGaagiPPPPPLPGgagiiP PPPPPLPg+ giPpPppLPG ++iPPPPPLPG +giPPPPPLP g gi P aj00184 762 PPPPPLPGA-GIPPPPPLPG-AGIPPPPPLPG-VGIPPPPPLP-GVGI-P 806 PPPaLPGevaipPPPPLpgGmgviP.PaPPlPG.aagiPPPPlgpgipPP PPP+LPG ++ipPPPPLp Gmg++P PaPPlP +++giPPPPl+p ++PP aj00184 807 PPPPLPG-AGIPPPPPLP-GMGIPPaPAPPLPPpGTGIPPPPLLPVSGPP 854 psfgvgvstlPalP<-* +vg+stlP+ aj00184 855 LLPQVGSSTLPTPQ 868 PF06346.3.ls: domain 3 of 3, from 719 to 868: score 119.0, E = 1.2e-32 *->PPpPPLPGvaiPPpPPlppgvaiPPpPPLPGGvgipPpPpLpGdaai PpPPLPG++iPPpPPl pg++iPPpPPLP G+gipPpPpLpG ++i aj00184 719 -PPPPLPGAGIPPPPPL-PGAGIPPPPPLP-GAGIPPPPPLPG-VGI 761 PPPPPLPgvagiPpPppLPGavaiPPPPPLPGaagiPPPPPLPGgagiiP PPPPPLPg+ giPpPppLPG ++iPPPPPLPG +giPPPPPLP g gi P aj00184 762 PPPPPLPGA-GIPPPPPLPG-AGIPPPPPLPG-VGIPPPPPLP-GVGI-P 806 PPPaLPGevaipPPPPLpgGmgviP.PaPPlPG.aagiPPPPlgpgipPP PPP+LPG ++ipPPPPLp Gmg++P PaPPlP +++giPPPPl+p ++PP aj00184 807 PPPPLPG-AGIPPPPPLP-GMGIPPaPAPPLPPpGTGIPPPPLLPVSGPP 854 psfgvgvstlPalP<-* +vg+stlP+ aj00184 855 LLPQVGSSTLPTPQ 868 PF02181.13.fs: domain 1 of 1, from 894 to 1283: score 454.7, E = 1.1e-133 *->kkepkpkkkLKpLhWdKlnpsqdrgt...svWdkldeesfekkldld k +++p++++KpL+W++++ + r+++++ +W+k++e +d aj00184 894 KQPIEPCRPMKPLYWTRIQLHSKRDSstsLIWEKIEEP------SID 934 lselEelFsakakkkkekksseksskskkkkkeisvLDpkrsQNiaIlLr + e+EelFs a+k+++k+ ++++ +++k+k+++++L++krsQ+++Il++ aj00184 935 CHEFEELFSKTAVKERKKP-ISDTISKTKAKQVVKLLSNKRSQAVGILMS 983 klsklppeeivqailemDedvLgvvlflkemldllenLlkmaPtkeElkk +l +l +++i++a+ ++D++v++ l++l++L+ + +++El+k aj00184 984 SL-HLDMKDIQHAVVNLDNSVVD--------LETLQALYENRAQSDELEK 1024 lqekeykgd.ekspskLgraEqqFLlelskliprleeRlrallFkstFee +++ + ++++ ++L+++E qFL+els ip+++eR+ ++lF+stF+e aj00184 1025 IEKHGRSSKdKENAKSLDKPE-QFLYELSL-IPNFSERVFCILFQSTFSE 1072 eveelkpsletleaAseeLreSrkfkklLeliLalGNyMNsGtrrrGnAk +++ + ++le l++ +e L++ + ++++L+l+La+GNyMN+G+++rG+A+ aj00184 1073 SICSIHRKLELLQKLCETLKNGPGVMQVLGLVLAFGNYMNGGNKTRGQAD 1122 GFkLssLlKLsdvKstidnktTLLHflvkeieesEGkrlEeyrKLklpel GF L++L+KL+dvKs+ dn ++LL ++v ++ ++++++ + +e aj00184 1123 GFGLDILPKLKDVKSS-DNSRSLLSYIVSYYLRNFDED-------AGKEQ 1164 ldfs.seLshVekAakvdleeLeadvkeLekglkklekelelseeSkvsd + f+ +e++++ +A+++ +e++++d+++L+k+lk++e e+ + + vs+ aj00184 1165 CLFPlPEPQDLFQASQMKFEDFQKDLRKLKKDLKACEVEAGKVYQ--VSS 1212 eepsdkFvevmkeFleeAeekldkLesllkeakelfkelteYFghggedp e++++F+e m++F+ +A+ ++ e l+e+ ++f e+t YF +p aj00184 1213 KEHMQPFKENMEQFIIQAKIDQEAEENSLTETHKCFLETTAYF---FMKP 1259 k..d.etspeeFFkilrdFlnefk<-* k +++e+sp++FF+i+++F ++fk aj00184 1260 KlgEkEVSPNAFFSIWHEFSSDFK 1283 PF02181.13.ls: domain 1 of 1, from 894 to 1283: score 456.7, E = 2.7e-134 *->kkepkpkkkLKpLhWdKlnpsqdrgt...svWdkldeesfekkldld k +++p++++KpL+W++++ + r+++++ +W+k++e +d aj00184 894 KQPIEPCRPMKPLYWTRIQLHSKRDSstsLIWEKIEEP------SID 934 lselEelFsakakkkkekksseksskskkkkkeisvLDpkrsQNiaIlLr + e+EelFs a+k+++k+ ++++ +++k+k+++++L++krsQ+++Il++ aj00184 935 CHEFEELFSKTAVKERKKP-ISDTISKTKAKQVVKLLSNKRSQAVGILMS 983 klsklppeeivqailemDedvLgvvlflkemldllenLlkmaPtkeElkk +l +l +++i++a+ ++D++v++ l++l++L+ + +++El+k aj00184 984 SL-HLDMKDIQHAVVNLDNSVVD--------LETLQALYENRAQSDELEK 1024 lqekeykgd.ekspskLgraEqqFLlelskliprleeRlrallFkstFee +++ + ++++ ++L+++E qFL+els ip+++eR+ ++lF+stF+e aj00184 1025 IEKHGRSSKdKENAKSLDKPE-QFLYELSL-IPNFSERVFCILFQSTFSE 1072 eveelkpsletleaAseeLreSrkfkklLeliLalGNyMNsGtrrrGnAk +++ + ++le l++ +e L++ + ++++L+l+La+GNyMN+G+++rG+A+ aj00184 1073 SICSIHRKLELLQKLCETLKNGPGVMQVLGLVLAFGNYMNGGNKTRGQAD 1122 GFkLssLlKLsdvKstidnktTLLHflvkeieesEGkrlEeyrKLklpel GF L++L+KL+dvKs+ dn ++LL ++v ++ ++++++ + +e aj00184 1123 GFGLDILPKLKDVKSS-DNSRSLLSYIVSYYLRNFDED-------AGKEQ 1164 ldfs.seLshVekAakvdleeLeadvkeLekglkklekelelseeSkvsd + f+ +e++++ +A+++ +e++++d+++L+k+lk++e e+ + + vs+ aj00184 1165 CLFPlPEPQDLFQASQMKFEDFQKDLRKLKKDLKACEVEAGKVYQ--VSS 1212 eepsdkFvevmkeFleeAeekldkLesllkeakelfkelteYFghggedp e++++F+e m++F+ +A+ ++ e l+e+ ++f e+t YF +p aj00184 1213 KEHMQPFKENMEQFIIQAKIDQEAEENSLTETHKCFLETTAYF---FMKP 1259 k..d.etspeeFFkilrdFlnefk<-* k +++e+sp++FF+i+++F ++fk aj00184 1260 KlgEkEVSPNAFFSIWHEFSSDFK 1283 //