hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-00525605/chunk_1/iprscan-20080807-00525605.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: aj00184
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00498                                                 310.4    1.2e-88   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00498      1/1     413  1297 ..     1   499 []   310.4  1.2e-88

Alignments of top-scoring domains:
SM00498: domain 1 of 1, from 413 to 1297: score 310.4, E = 1.2e-88
                   *->pkkepkpkkkLKqLhWdklnslrssrqAp.s.N..............
                      p  ++ ++++ ++L W++ +   ++ q+p+s  ++ +++++++ ++ 
     aj00184   413    PTQSISQPPPPPSLLWSAGQG-QPGSQPPhSiStefqtshehsvssa 458  

                   ..................................................
                    +++ + +++++ + ++++++ ++ +  ++++++ ++ + ++ +++  ++
     aj00184   459 fknscnipsppplpctessssmpglgmvpppppplpgmtvptlpstaipq 508  

                   ..................................................
                   +++ ++++  ++++++ ++ + +++++ ++ +  + ++ ++ + +++++ 
     aj00184   509 ppplqgtemlpppppplpgagippppplpgagilplpplpgagipppppl 558  

                   ..................................................
                   ++   +++++ ++ + + +++ ++ + +++++ ++ + +++++ ++ + +
     aj00184   559 pgaaippppplpgagiplppplpgagippppplpgagippppplpgagip 608  

                   ..................................................
                   ++++ ++ + +++++ ++ + +++++ ++ + +++++ ++ + +++++ +
     aj00184   609 pppplpgagippppplpgagippppplpgagippppplpgagippppplp 658  

                   ..................................................
                   + + +++++ ++ + +++++ ++ + +++++ ++ + +++++ ++ + ++
     aj00184   659 gagippppplpgagippppplpgagippppplpgagippppplpgagipp 708  

                   ..................................................
                   +++ ++ + +++++ ++ + +++++ ++ + +++++ ++ + +++++ ++
     aj00184   709 ppplpgvgippppplpgagippppplpgagippppplpgagippppplpg 758  

                   ..................................................
                    + +++++ ++ + +++++ ++ + +++++ ++ + +++++ ++ + +++
     aj00184   759 vgippppplpgagippppplpgagippppplpgvgippppplpgvgippp 808  

                   ..................................................
                   ++ ++ + +++++ ++ + ++ + ++ ++++++ ++++  + ++++  ++
     aj00184   809 pplpgagippppplpgmgippapapplpppgtgippppllpvsgppllpq 858  

                   ..................................................
                    ++++ ++++  +  +++ +++  + + ++++++++++ ++ ++ ++   
     aj00184   859 vgsstlptpqvcgflppplpsglfglgmnqdkgsrkqpiepcrpmkplyw 908  

                   ...........PseisegtvWettvndkldeekfLynnldldeleelFaa
                   ++ + ++++++  +     +W      k++e ++     d  e+eelF +
     aj00184   909 triqlhskrdsSTS----LIW-----EKIEEPSI-----DCHEFEELF-S 943  

                   kektkkakkrsvsekksklkkkkvqqnlkilDpkrsqnpplaIllrslhc
                   k++ k  kk ++s++ s   k k++q++k+l  krsq+  ++Il +sl  
     aj00184   944 KTAVKERKK-PISDTIS---KTKAKQVVKLLSNKRSQA--VGILMSSL-- 985  

                   klsfeetvikeailevDedvlsvdlleqLlkfaPYsktkeelkklreyke
                   +l++++  i++a  + D +v+ +++l++L+++ +   + +el k++++ +
     aj00184   986 HLDMKD--IQHAVVNLDNSVVDLETLQALYENRA---QSDELEKIEKHGR 1030 

                   dd..ekspeeLaraeqiFlllisnLipyleeRlnallfkanFeeevedLk
                    +++ + + +L+ +eq Fl+++s  ip ++eR+ ++lf+++F+e +  ++
     aj00184  1031 SSkdKENAKSLDKPEQ-FLYELSL-IPNFSERVFCILFQSTFSESICSIH 1078 

                   pklekveaAceeLreSkkFrklLeliLaiGNyMNagsrrrrGqAqGFkLs
                   +kle +++ ce L++ + ++++L+l+La+GNyMN+g++  rGqA+GF L+
     aj00184  1079 RKLELLQKLCETLKNGPGVMQVLGLVLAFGNYMNGGNKT-RGQADGFGLD 1127 

                   sLlkLsdvKsadnktTLLHflvkiirkkypdllkFysdlhhvdkaskvnl
                   +L kL+dvKs+dn  +LL ++v ++++++ +                   
     aj00184  1128 ILPKLKDVKSSDNSRSLLSYIVSYYLRNFDE------------------- 1158 

                   eqlekdvkqlerqiknlEldkggLsdpeghpddkflevmtpFlkaAkeky
                           ++++       ++  ++ p  +p + ++       +a+++k+
     aj00184  1159 --------DAGK-------EQCLFPLP--EP-QDLF-------QASQMKF 1183 

                   ekLqkdlrdlktrfeklveyygedpkdrdvspeeFFkdfneFlkeFkkaa
                   e+ qkdlr+lk++++++ +  g + ++   s+ e +++f+e++++F   a
     aj00184  1184 EDFQKDLRKLKKDLKACEVEAGKVYQV---SSKEHMQPFKENMEQFIIQA 1230 

                   eenlaiEskrkeeEeeerrakqlalrvketteyeqssskqkeneerrver
                   +        +  eE ++ ++++ +    ett+y+ +++k +e     +e+
     aj00184  1231 KID------QEAEENSLTETHKCF---LETTAYFFMKPKLGE-----KEV 1266 

                   nplmdfeverdflgvldsllkelrtdssfer<-*
                   +p   f+++  f  ++++++k++ +    er   
     aj00184  1267 SPNAFFSIWHEFSSDFKDFWKKENKLLLQER    1297 

//