hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-00584252/chunk_1/iprscan-20080807-00584252.nocrc
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Query sequence: aj00209
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00146                                                 436.9     1e-126   1
SM00145                                                 304.9    5.9e-87   1
SM00142                                                 118.1    9.7e-31   1
SM00144                                                  27.2     0.0015   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00144      1/1       1    82 [.     1   116 []    27.2   0.0015
SM00142      1/1     110   213 ..     1   133 []   118.1  9.7e-31
SM00145      1/1     299   486 ..     1   232 []   304.9  5.9e-87
SM00146      1/1     576   842 ..     1   336 []   436.9   1e-126

Alignments of top-scoring domains:
SM00144: domain 1 of 1, from 1 to 82: score 27.2, E = 0.0015
                   *->ssrlvPeplpkktiankilivvhlekrvhnkqqtktlkvnpnctpds
                               +              e        ++t++v+  ++p +
     aj00209     1    ---------E--------------E--------SFTFQVSTKDVPLA 16   

                   vleealtKfakklslhdqedptdegdYiLKVcGrdEYllgdhpLgsfeyi
                   +++ al+K   k++++ q+ +  + dY L+V Gr EYl g +pL +f+yi
     aj00209    17 LMACALRK---KATVFRQPLVEQPEDYTLQVNGRHEYLYGSYPLCQFQYI 63   

                   rnclkngtephLvLvelsk<-*
                    +cl +g  phL++v +s+   
     aj00209    64 CSCLHSGLTPHLTMVHSSS    82   

SM00142: domain 1 of 1, from 110 to 213: score 118.1, E = 9.7e-31
                   *->vkiesLwdgkrplvalPhestialihgiplnwsslyesscvdlyvei
                      +k++s++ +++++      ++i li+g + n+++ +     +l+v++
     aj00209   110    KKPSSVSLWSLEQP-----FRIELIQGSKVNADERM-----KLVVQA 146  

                   qLyhGvgkllclpvsTsyknyvkaffnrtiiltvkWnewltftpikisdL
                   +L+hG +++lc++vs+s+   v  ++ +      +W + l+f +i+i+dL
     aj00209   147 GLFHG-NEMLCKTVSSSE---VSVCSEP------VWKQRLEF-DINICDL 185  

                   PreArLcitiyevkddskksepfgsvlVgssnlslf<-*
                   Pr+ArLc+++y+v++ ++k++       +s++++++   
     aj00209   186 PRMARLCFVLYAVIE-KAKKA-------RSTKKKSK    213  

SM00145: domain 1 of 1, from 299 to 486: score 304.9, E = 5.9e-87
                   *->drdlkpsldseerdrLeaIlkydplyeLteeekdLiWkfRhyyltnn
                      + ++++  ++ee+ +L +Il++  + eL+e+ekdL+Wk+Rh+ ++++
     aj00209   299    SECVHV--TEEEQLQLWEILERRGSGELYEHEKDLVWKLRHEVQEHF 343  

                   pkALplvcgPKfLlsvnWsdadevaqalsLLkkWvnapldpedALELLdp
                   p+AL+     ++Ll ++W+++++vaq+l+LL +W  ++l+++ ALELLd+
     aj00209   344 PEALA-----RLLLVTKWNKHEDVAQMLYLLCSW--PELPVLSALELLDF 386  

                   kFpdnNvpkVRayAVsrLesasDeeLllYLLQLVQALKYEnlddikslec
                   +Fpd   ++V ++A+++L++++D+eL++YLLQLVQ+LKYE          
     aj00209   387 SFPD---CHVGSFAIKSLRKLTDDELFQYLLQLVQVLKYE---------- 423  

                   efdqdvsasktkeedgpyldSpLarFLLeRAlkNpriGhffyWyLksEie
                                   +yld++L+ FLL+RAl+N++iGhf++W+L+sE+ 
     aj00209   424 ----------------SYLDCELTKFLLDRALANRKIGHFLFWHLRSEM- 456  

                   kddslhdphvserfgllleaylrgctgthlkelkk<-*
                        h p+v+ rfgl+leay+rg+t++++  +k+   
     aj00209   457 -----HVPSVALRFGLILEAYCRGSTHHMKVLMKQ    486  

SM00146: domain 1 of 1, from 576 to 842: score 436.9, E = 1e-126
                   *->avIfKggDDLRQDalvlQllrlmdklLkkdsetrrldLhlrpYkvlp
                      ++IfK+gDDLRQD+l+lQ+++lmd l+k++    +ldL+++pY++lp
     aj00209   576    GIIFKNGDDLRQDMLTLQMIQLMDVLWKQE----GLDLRMTPYGCLP 618  

                   tgpksGliEvvpnsetlheIlkelrkkkkipldykqlfmldmlvaeieka
                   tg+++GliEvv  s+t+++I+                             
     aj00209   619 TGDRTGLIEVVLRSDTIANIQL---------------------------- 640  

                   qyptitlakakkkalrykhatlleklkvfegatsafkppvLydwfkekfp
                                             k+++ at+af+++ L++w+k+k+p
     aj00209   641 -------------------------NKSNMAATAAFNKDALLNWLKSKNP 665  

                   dpneiyfeardnFtrScAgySvvtYiLGlGDRHndNImldrktGhlfHID
                   ++  +   a++ Ft+ScAgy+v+tY+LG+GDRH+dNIm+  ++G+lfHID
     aj00209   666 GE--ALDRAIEEFTLSCAGYCVATYVLGIGDRHSDNIMIR-ESGQLFHID 712  

                   FGfilgngpklpgfklfgRErvPFrLTpemvdvmGgG.gkpsgvfglFrs
                   FG++lgn+++++g++   RErvPF+LT+++v+v+ +G+  +s+ f +Fr 
     aj00209   713 FGHFLGNFKTKFGIN---RERVPFILTYDFVHVIQQGkTNNSEKFERFRG 759  

                   lCerayralRknsnllmnllelMlsdglmpewrsgekdikylrerlrldv
                   +Ceray++lR++  l+++l++lM  +gl pe++ + kdi+yl+++l l  
     aj00209   760 YCERAYTILRRHGLLFLHLFALMRAAGL-PELSCS-KDIQYLKDSLALG- 806  

                   lsdeeaaeyfkktektkliessleslttrlndlfhllaql<-*
                   +++eea+++f    ++k+ e+++es+ t++n+l+h++ +    
     aj00209   807 KTEEEALKHF----RVKFNEALRESWKTKVNWLAHNVSKD    842  

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