# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Oaj00333.fasta.nr -Q aj00333.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 aj00333, 938 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6820886 sequences Expectation_n fit: rho(ln(x))= 5.4046+/-0.00019; mu= 13.1480+/- 0.011 mean_var=77.5223+/-15.433, 0's: 37 Z-trim: 74 B-trim: 1271 in 2/65 Lambda= 0.145667 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|37999830|sp|Q9Y5G0.1|PCDGH_HUMAN Protocadherin ( 923) 6043 1280.0 0 gi|62510860|sp|Q5DRA7.1|PCDGH_PANTR Protocadherin ( 923) 6000 1271.0 0 gi|5457090|gb|AAD43781.1|AF152521_1 protocadherin ( 818) 5201 1103.0 0 gi|37999814|sp|Q9UN71.1|PCDGG_HUMAN Protocadherin ( 923) 5195 1101.8 0 gi|62510861|sp|Q5DRA8.1|PCDGG_PANTR Protocadherin ( 923) 5184 1099.5 0 gi|149017334|gb|EDL76385.1| rCG49295, isoform CRA_ ( 924) 5180 1098.6 0 gi|127138610|ref|NP_001076030.1| protocadherin gam ( 923) 5176 1097.8 0 gi|148678177|gb|EDL10124.1| mCG133388, isoform CRA ( 926) 5163 1095.1 0 gi|114602373|ref|XP_001149798.1| PREDICTED: protoc ( 818) 5158 1094.0 0 gi|13876352|gb|AAK26096.1| protocadherin gamma B5 ( 926) 5155 1093.4 0 gi|151556920|gb|AAI49019.1| PCDHGB4 protein [Bos t ( 923) 4934 1046.9 0 gi|149017330|gb|EDL76381.1| rCG49295, isoform CRA_ ( 917) 4831 1025.3 0 gi|149017335|gb|EDL76386.1| rCG49295, isoform CRA_ ( 862) 4721 1002.1 0 gi|76623332|ref|XP_604450.2| PREDICTED: similar to ( 806) 4628 982.6 0 gi|194219797|ref|XP_001917802.1| PREDICTED: protoc ( 806) 4587 974.0 0 gi|37999829|sp|Q9Y5F9.1|PCDGI_HUMAN Protocadherin ( 930) 4563 969.0 0 gi|62510859|sp|Q5DRA6.1|PCDGI_PANTR Protocadherin ( 930) 4562 968.8 0 gi|73949437|ref|XP_849474.1| PREDICTED: similar to ( 836) 4548 965.8 0 gi|62510863|sp|Q5DRB0.1|PCDGD_PANTR Protocadherin ( 927) 4441 943.3 0 gi|37999833|sp|Q9Y5G3.1|PCDGD_HUMAN Protocadherin ( 927) 4414 937.7 0 gi|149017338|gb|EDL76389.1| rCG49295, isoform CRA_ ( 930) 4412 937.2 0 gi|62510862|sp|Q5DRA9.1|PCDGE_PANTR Protocadherin ( 931) 4411 937.0 0 gi|127138947|ref|NP_001076031.1| protocadherin gam ( 931) 4405 935.8 0 gi|37999832|sp|Q9Y5G2.1|PCDGE_HUMAN Protocadherin ( 931) 4388 932.2 0 gi|13876346|gb|AAK26093.1| protocadherin gamma B1 ( 918) 4373 929.0 0 gi|149017331|gb|EDL76382.1| rCG49295, isoform CRA_ ( 855) 4372 928.8 0 gi|5457088|gb|AAD43780.1|AF152520_1 protocadherin ( 803) 4368 927.9 0 gi|13876354|gb|AAK26097.1| protocadherin gamma B6 ( 930) 4365 927.4 0 gi|32451789|gb|AAH54741.1| Protocadherin gamma sub ( 918) 4361 926.5 0 gi|37999828|sp|Q9Y5F8.1|PCDGJ_HUMAN Protocadherin ( 929) 4357 925.7 0 gi|149270010|ref|XP_001476727.1| PREDICTED: simila ( 815) 4353 924.8 0 gi|114602365|ref|XP_001149246.1| PREDICTED: simila ( 803) 4349 924.0 0 gi|62510858|sp|Q5DRA5.1|PCDGJ_PANTR Protocadherin ( 929) 4343 922.7 0 gi|13876348|gb|AAK26094.1| protocadherin gamma B2 ( 928) 4302 914.1 0 gi|148678189|gb|EDL10136.1| mCG133388, isoform CRA ( 928) 4300 913.7 0 gi|149017321|gb|EDL76372.1| rCG49295, isoform CRA_ ( 928) 4297 913.1 0 gi|119582355|gb|EAW61951.1| hCG1982215, isoform CR ( 929) 4288 911.2 0 gi|37999831|sp|Q9Y5G1.1|PCDGF_HUMAN Protocadherin ( 929) 4283 910.1 0 gi|56269452|gb|AAH87084.1| Protocadherin gamma b7 ( 931) 4274 908.2 0 gi|44890274|gb|AAH66823.1| Pcdhgb7 protein [Mus mu ( 931) 4244 901.9 0 gi|50512427|gb|AAT77608.1| protocadherin gamma b8 ( 929) 4237 900.5 0 gi|13876356|gb|AAK26098.1| protocadherin gamma B7 ( 929) 4233 899.6 0 gi|13876358|gb|AAK26099.1| protocadherin gamma B8 ( 931) 4194 891.4 0 gi|149017339|gb|EDL76390.1| rCG49295, isoform CRA_ ( 868) 3953 840.8 0 gi|149017322|gb|EDL76373.1| rCG49295, isoform CRA_ ( 866) 3838 816.6 0 gi|149017343|gb|EDL76394.1| rCG49295, isoform CRA_ ( 869) 3815 811.8 0 gi|148678191|gb|EDL10138.1| mCG133388, isoform CRA ( 912) 3792 806.9 0 gi|26350643|dbj|BAC38958.1| unnamed protein produc ( 829) 3791 806.7 0 gi|13876350|gb|AAK26095.1| protocadherin gamma B4 ( 912) 3791 806.7 0 gi|149017347|gb|EDL76398.1| rCG49295, isoform CRA_ ( 867) 3778 804.0 0 >>gi|37999830|sp|Q9Y5G0.1|PCDGH_HUMAN Protocadherin gamm (923 aa) initn: 6043 init1: 6043 opt: 6043 Z-score: 6856.6 bits: 1280.0 E(): 0 Smith-Waterman score: 6043; 100.000% identity (100.000% similar) in 923 aa overlap (16-938:1-923) 10 20 30 40 50 60 aj0033 PGVSRLVSKLRRARGMGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGS ::::::::::::::::::::::::::::::::::::::::::::: gi|379 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGS 10 20 30 40 70 80 90 100 110 120 aj0033 VVGNLATDLGFSVQELPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|379 VVGNLATDLGFSVQELPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALE 50 60 70 80 90 100 130 140 150 160 170 180 aj0033 FEAVAENPLNFYHVNVEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|379 FEAVAENPLNFYHVNVEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLN 110 120 130 140 150 160 190 200 210 220 230 240 aj0033 SLQKYKLSLNPSFSLIIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|379 SLQKYKLSLNPSFSLIIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGT 170 180 190 200 210 220 250 260 270 280 290 300 aj0033 TELRIQVTDANDNPPVFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|379 TELRIQVTDANDNPPVFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTG 230 240 250 260 270 280 310 320 330 340 350 360 aj0033 QIFSLNSKSGEITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|379 QIFSLNSKSGEITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTF 290 300 310 320 330 340 370 380 390 400 410 420 aj0033 HSLLEMILENAVPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|379 HSLLEMILENAVPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGT 350 360 370 380 390 400 430 440 450 460 470 480 aj0033 LDREQTPEYNVTITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|379 LDREQTPEYNVTITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGA 410 420 430 440 450 460 490 500 510 520 530 540 aj0033 SIAQVCASDLDLGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|379 SIAQVCASDLDLGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFE 470 480 490 500 510 520 550 560 570 580 590 600 aj0033 LTLQARDQGSPALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|379 LTLQARDQGSPALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVT 530 540 550 560 570 580 610 620 630 640 650 660 aj0033 KVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|379 KVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDG 590 600 610 620 630 640 670 680 690 700 710 720 aj0033 GQPPLSATATLHLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|379 GQPPLSATATLHLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVIL 650 660 670 680 690 700 730 740 750 760 770 780 aj0033 AVALRLRRSSSPAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFLKC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|379 AVALRLRRSSSPAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFLKC 710 720 730 740 750 760 790 800 810 820 830 840 aj0033 SEQLSSGQDILCGDSSGALFPLCNSSESTSHPELQAPPNTDWRFSQAQRPGTSGSQNGDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|379 SEQLSSGQDILCGDSSGALFPLCNSSESTSHPELQAPPNTDWRFSQAQRPGTSGSQNGDD 770 780 790 800 810 820 850 860 870 880 890 900 aj0033 TGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|379 TGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQN 830 840 850 860 870 880 910 920 930 aj0033 VYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK :::::::::::::::::::::::::::::::::::::: gi|379 VYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 890 900 910 920 >>gi|62510860|sp|Q5DRA7.1|PCDGH_PANTR Protocadherin gamm (923 aa) initn: 6000 init1: 6000 opt: 6000 Z-score: 6807.7 bits: 1271.0 E(): 0 Smith-Waterman score: 6000; 99.242% identity (99.783% similar) in 923 aa overlap (16-938:1-923) 10 20 30 40 50 60 aj0033 PGVSRLVSKLRRARGMGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGS :: :.:::::::::::::::::::::::::::::::::::::::: gi|625 MGRGTGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGS 10 20 30 40 70 80 90 100 110 120 aj0033 VVGNLATDLGFSVQELPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 VVGNLATDLGFSVQELPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALE 50 60 70 80 90 100 130 140 150 160 170 180 aj0033 FEAVAENPLNFYHVNVEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 FEAVAENPLNFYHVNVEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLN 110 120 130 140 150 160 190 200 210 220 230 240 aj0033 SLQKYKLSLNPSFSLIIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGT :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: gi|625 SLQKYKLSLNPSFSLIIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGNPPLSGT 170 180 190 200 210 220 250 260 270 280 290 300 aj0033 TELRIQVTDANDNPPVFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 TELRIQVTDANDNPPVFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTG 230 240 250 260 270 280 310 320 330 340 350 360 aj0033 QIFSLNSKSGEITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 QIFSLNSKSGEITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTF 290 300 310 320 330 340 370 380 390 400 410 420 aj0033 HSLLEMILENAVPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 HSLLEMILENAVPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGT 350 360 370 380 390 400 430 440 450 460 470 480 aj0033 LDREQTPEYNVTITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 LDREQTPEYNVTITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGA 410 420 430 440 450 460 490 500 510 520 530 540 aj0033 SIAQVCASDLDLGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 SIAQVCASDLDLGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFE 470 480 490 500 510 520 550 560 570 580 590 600 aj0033 LTLQARDQGSPALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 LTLQARDQGSPALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVT 530 540 550 560 570 580 610 620 630 640 650 660 aj0033 KVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDG ::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::: gi|625 KVVAVDADSGHNAWLSYHVLHASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDG 590 600 610 620 630 640 670 680 690 700 710 720 aj0033 GQPPLSATATLHLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 GQPPLSATATLHLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVIL 650 660 670 680 690 700 730 740 750 760 770 780 aj0033 AVALRLRRSSSPAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFLKC :.:::::::::::::::::::::::::::::::::.:::::::::::::::::::::::: gi|625 AIALRLRRSSSPAAWSCFQPGLCVKSGPVVPPNYSEGTLPYSYNLCVAHTGKTEFNFLKC 710 720 730 740 750 760 790 800 810 820 830 840 aj0033 SEQLSSGQDILCGDSSGALFPLCNSSESTSHPELQAPPNTDWRFSQAQRPGTSGSQNGDD :::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 SEQLSSEQDILCGDSSGALFPLCNSSESTSHPELQAPPNTDWRFSQAQRPGTSGSQNGDD 770 780 790 800 810 820 850 860 870 880 890 900 aj0033 TGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 TGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQN 830 840 850 860 870 880 910 920 930 aj0033 VYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK :::::::::::::::::::::::::::::::::::::: gi|625 VYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 890 900 910 920 >>gi|5457090|gb|AAD43781.1|AF152521_1 protocadherin gamm (818 aa) initn: 5201 init1: 5201 opt: 5201 Z-score: 5901.0 bits: 1103.0 E(): 0 Smith-Waterman score: 5201; 100.000% identity (100.000% similar) in 799 aa overlap (16-814:1-799) 10 20 30 40 50 60 aj0033 PGVSRLVSKLRRARGMGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGS ::::::::::::::::::::::::::::::::::::::::::::: gi|545 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGS 10 20 30 40 70 80 90 100 110 120 aj0033 VVGNLATDLGFSVQELPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|545 VVGNLATDLGFSVQELPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALE 50 60 70 80 90 100 130 140 150 160 170 180 aj0033 FEAVAENPLNFYHVNVEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|545 FEAVAENPLNFYHVNVEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLN 110 120 130 140 150 160 190 200 210 220 230 240 aj0033 SLQKYKLSLNPSFSLIIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|545 SLQKYKLSLNPSFSLIIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGT 170 180 190 200 210 220 250 260 270 280 290 300 aj0033 TELRIQVTDANDNPPVFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|545 TELRIQVTDANDNPPVFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTG 230 240 250 260 270 280 310 320 330 340 350 360 aj0033 QIFSLNSKSGEITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|545 QIFSLNSKSGEITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTF 290 300 310 320 330 340 370 380 390 400 410 420 aj0033 HSLLEMILENAVPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|545 HSLLEMILENAVPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGT 350 360 370 380 390 400 430 440 450 460 470 480 aj0033 LDREQTPEYNVTITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|545 LDREQTPEYNVTITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGA 410 420 430 440 450 460 490 500 510 520 530 540 aj0033 SIAQVCASDLDLGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|545 SIAQVCASDLDLGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFE 470 480 490 500 510 520 550 560 570 580 590 600 aj0033 LTLQARDQGSPALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|545 LTLQARDQGSPALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVT 530 540 550 560 570 580 610 620 630 640 650 660 aj0033 KVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|545 KVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDG 590 600 610 620 630 640 670 680 690 700 710 720 aj0033 GQPPLSATATLHLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|545 GQPPLSATATLHLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVIL 650 660 670 680 690 700 730 740 750 760 770 780 aj0033 AVALRLRRSSSPAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFLKC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|545 AVALRLRRSSSPAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFLKC 710 720 730 740 750 760 790 800 810 820 830 840 aj0033 SEQLSSGQDILCGDSSGALFPLCNSSESTSHPELQAPPNTDWRFSQAQRPGTSGSQNGDD :::::::::::::::::::::::::::::::::: gi|545 SEQLSSGQDILCGDSSGALFPLCNSSESTSHPELVSFIYVYSFSLPTQFSVFT 770 780 790 800 810 850 860 870 880 890 900 aj0033 TGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQN >>gi|37999814|sp|Q9UN71.1|PCDGG_HUMAN Protocadherin gamm (923 aa) initn: 2818 init1: 2818 opt: 5195 Z-score: 5893.4 bits: 1101.8 E(): 0 Smith-Waterman score: 5195; 85.622% identity (94.595% similar) in 925 aa overlap (16-938:1-923) 10 20 30 40 50 60 aj0033 PGVSRLVSKLRRARGMGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGS ::::::::::::::::::::::::::::::::::::::::::::: gi|379 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGS 10 20 30 40 70 80 90 100 110 120 aj0033 VVGNLATDLGFSVQELPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|379 VVGNLATDLGFSVQELPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALE 50 60 70 80 90 100 130 140 150 160 170 180 aj0033 FEAVAENPLNFYHVNVEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLN ::::::::::::::::::::::::::::::::::::::::::::::::: :.::::: : gi|379 FEAVAENPLNFYHVNVEIEDINDHTPKFTQNSFELQISESAQPGTRFILGSAHDADIGSN 110 120 130 140 150 160 190 200 210 220 230 240 aj0033 SLQKYKLSLNPSFSLIIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGT .::.:.:: . :::: :::.:::::::..:. ::::.:. ..:.::::: : ::::.: gi|379 TLQNYQLSPSDHFSLINKEKSDGSKYPEMVLKTPLDREKQKSYHLTLTALDFGAPPLSST 170 180 190 200 210 220 250 260 270 280 290 300 aj0033 TELRIQVTDANDNPPVFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTG ..... ::::::: :::..::::::: ::: ::::::::.:::::::.:.:::.:: ... gi|379 AQIHVLVTDANDNAPVFSQDVYRVSLSENVYPGTTVLQVTATDQDEGVNAEITFSFSEAS 230 240 250 260 270 280 310 320 330 340 350 aj0033 QI--FSLNSKSGEITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEV :: :.:::..::::. . :::::.::::.:.:.:::::..::::::... :::::.::: gi|379 QITQFDLNSNTGEITVLNTLDFEEVKEYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEV 290 300 310 320 330 340 360 370 380 390 400 410 aj0033 TFHSLLEMILENAVPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTD :.:: ..:.:.: :: :::.:..:.:: .::::.:.:.:.:::::..::.:.:::::: gi|379 IFQSLPNLIMEDAELGTHIALLKVRDKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTD 350 360 370 380 390 400 420 430 440 450 460 470 aj0033 GTLDREQTPEYNVTITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPP ..:::::.::::.:.::::::::::::: :. ::: ::::::::: :.::.: : ::::: gi|379 AVLDREQNPEYNITVTATDRGKPPLSSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPP 410 420 430 440 450 460 480 490 500 510 520 530 aj0033 GASIAQVCASDLDLGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRT ::::.:: ::: ::: :::::: ::::::: :.::::.::.:::::::::::.::::. gi|379 GASISQVRASDPDLGPNGQVSYCIMASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRA 470 480 490 500 510 520 540 550 560 570 580 590 aj0033 FELTLQARDQGSPALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYL ::::::::::::::::::::::::: ::::::::::::::::::::::::::.::::::: gi|379 FELTLQARDQGSPALSANVSLRVLVDDRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYL 530 540 550 560 570 580 600 610 620 630 640 650 aj0033 VTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVR ::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::: gi|379 VTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVR 590 600 610 620 630 640 660 670 680 690 700 710 aj0033 DGGQPPLSATATLHLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAV :::::::::::::::::::::::::::::::: ::: ::::::::::::::::::::.:. gi|379 DGGQPPLSATATLHLVFADSLQEVLPDITDRPDPSDLQAELQFYLVVALALISVLFLVAM 650 660 670 680 690 700 720 730 740 750 760 770 aj0033 ILAVALRLRRSSSPAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFL :::.:::::::::::.:::::::::::: :::::::.:::::::::::::::::::::: gi|379 ILAIALRLRRSSSPASWSCFQPGLCVKSESVVPPNYSEGTLPYSYNLCVAHTGKTEFNFL 710 720 730 740 750 760 780 790 800 810 820 830 aj0033 KCSEQLSSGQDILCGDSSGALFPLCNSSESTSHPELQAPPNTDWRFSQAQRPGTSGSQNG ::::::::::::::::::::::::::::: ::: :::::::::::::::::::::::: gi|379 KCSEQLSSGQDILCGDSSGALFPLCNSSELTSHQ--QAPPNTDWRFSQAQRPGTSGSQNG 770 780 790 800 810 820 840 850 860 870 880 890 aj0033 DDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|379 DDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYR 830 840 850 860 870 880 900 910 920 930 aj0033 QNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK :::::::::::::::::::::::::::::::::::::::: gi|379 QNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 890 900 910 920 >>gi|62510861|sp|Q5DRA8.1|PCDGG_PANTR Protocadherin gamm (923 aa) initn: 2808 init1: 2808 opt: 5184 Z-score: 5880.9 bits: 1099.5 E(): 0 Smith-Waterman score: 5184; 85.189% identity (94.486% similar) in 925 aa overlap (16-938:1-923) 10 20 30 40 50 60 aj0033 PGVSRLVSKLRRARGMGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGS ::::::::::::::::::::::::::::::::::::::::::::: gi|625 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGS 10 20 30 40 70 80 90 100 110 120 aj0033 VVGNLATDLGFSVQELPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 VVGNLATDLGFSVQELPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALE 50 60 70 80 90 100 130 140 150 160 170 180 aj0033 FEAVAENPLNFYHVNVEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLN ::::::::::::::::::::::::::::::::::::::::::::::::: :.::::: : gi|625 FEAVAENPLNFYHVNVEIEDINDHTPKFTQNSFELQISESAQPGTRFILGSAHDADIGSN 110 120 130 140 150 160 190 200 210 220 230 240 aj0033 SLQKYKLSLNPSFSLIIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGT .::.:.:: . :::: :::.:::::::..:. ::::.:. ..:.::::: : ::::.: gi|625 TLQNYQLSPSDHFSLINKEKSDGSKYPEMVLKTPLDREKQKSYHLTLTALDFGAPPLSST 170 180 190 200 210 220 250 260 270 280 290 300 aj0033 TELRIQVTDANDNPPVFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTG ..... ::::::: :::..:.::::: ::: ::::::::.:::::::.:.:::.:: ... gi|625 AQIHVLVTDANDNAPVFSQDIYRVSLSENVYPGTTVLQVTATDQDEGVNAEITFSFSEAS 230 240 250 260 270 280 310 320 330 340 350 aj0033 QI--FSLNSKSGEITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEV :: :.:::..::::. . :::::.::::.:.:.:::::..::::::... :::::.::: gi|625 QITQFDLNSNTGEITVLNTLDFEEVKEYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEV 290 300 310 320 330 340 360 370 380 390 400 410 aj0033 TFHSLLEMILENAVPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTD :.:: ..:.:.: :: :::.:..:.:: .::::.:.:.:.:::::..::.:.:::::: gi|625 IFQSLPNLIMEDAELGTHIALLKVRDKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTD 350 360 370 380 390 400 420 430 440 450 460 470 aj0033 GTLDREQTPEYNVTITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPP ..:::::.::::.:.:: :::::::::: :. ::: ::::::::: :.::.: : ::::: gi|625 AVLDREQNPEYNITVTARDRGKPPLSSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPP 410 420 430 440 450 460 480 490 500 510 520 530 aj0033 GASIAQVCASDLDLGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRT ::::.:: ::: ::: :::::: :.::::: :.::::.::.:::::::::::.::::. gi|625 GASISQVSASDPDLGPNGQVSYCIIASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRA 470 480 490 500 510 520 540 550 560 570 580 590 aj0033 FELTLQARDQGSPALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYL ::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::: gi|625 FELTLQARDQGSPALSANVSLRVLVDDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYL 530 540 550 560 570 580 600 610 620 630 640 650 aj0033 VTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVR ::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::: gi|625 VTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVR 590 600 610 620 630 640 660 670 680 690 700 710 aj0033 DGGQPPLSATATLHLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAV :::::::::::::::::::::::::::::::: ::: .:::::::::::::::::::.:. gi|625 DGGQPPLSATATLHLVFADSLQEVLPDITDRPDPSDLEAELQFYLVVALALISVLFLVAM 650 660 670 680 690 700 720 730 740 750 760 770 aj0033 ILAVALRLRRSSSPAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFL :::.:::::::::::.:::::::::::: :::::::.:::::::::::::::::::::: gi|625 ILAIALRLRRSSSPASWSCFQPGLCVKSESVVPPNYSEGTLPYSYNLCVAHTGKTEFNFL 710 720 730 740 750 760 780 790 800 810 820 830 aj0033 KCSEQLSSGQDILCGDSSGALFPLCNSSESTSHPELQAPPNTDWRFSQAQRPGTSGSQNG ::.:::::::::::::::::::::::::: ::: :::::::::::::::::::::::: gi|625 KCNEQLSSGQDILCGDSSGALFPLCNSSELTSHQ--QAPPNTDWRFSQAQRPGTSGSQNG 770 780 790 800 810 820 840 850 860 870 880 890 aj0033 DDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 DDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYR 830 840 850 860 870 880 900 910 920 930 aj0033 QNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK :::::::::::::::::::::::::::::::::::::::: gi|625 QNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 890 900 910 920 >>gi|149017334|gb|EDL76385.1| rCG49295, isoform CRA_u [R (924 aa) initn: 4368 init1: 4368 opt: 5180 Z-score: 5876.4 bits: 1098.6 E(): 0 Smith-Waterman score: 5180; 85.390% identity (94.372% similar) in 924 aa overlap (16-938:1-924) 10 20 30 40 50 60 aj0033 PGVSRLVSKLRRARGMGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGS : ::.: :..: :.:. ::: :::::: :::::.:::::: :: gi|149 MREGAAERRRGHRRPMLLPFLLPLFCPALSEQIRYKIPEEMPTGS 10 20 30 40 70 80 90 100 110 120 aj0033 VVGNLATDLGFSVQELPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALE :::::: ::::.::::::::::.::::::::::.::::::::::::::.::::: .:.:: gi|149 VVGNLAKDLGFGVQELPTRKLRISSEKPYFTVSSESGELLVSSRLDREQICGKKLVCSLE 50 60 70 80 90 100 130 140 150 160 170 180 aj0033 FEAVAENPLNFYHVNVEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLN ::::::::::::::.::.::::::::::...::::::::::::::::::::::::::.:: gi|149 FEAVAENPLNFYHVSVELEDINDHTPKFAHTSFELQISESAQPGTRFILEVAEDADIALN 110 120 130 140 150 160 190 200 210 220 230 240 aj0033 SLQKYKLSLNPSFSLIIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGT :::.:::::.:::::. :::::: :::::.::::::::::::.:::::::::: ::::.: gi|149 SLQNYKLSLSPSFSLVNKEKQDGRKYPELVLEKTLDREQQSYYRLVLTALDGGDPPLSST 170 180 190 200 210 220 250 260 270 280 290 300 aj0033 TELRIQVTDANDNPPVFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTG :::::::::::::::::...:::: : ::::::::: .:.:::.:::.::::::::.:.: gi|149 TELRIQVTDANDNPPVFDQEVYRVRLPENVPPGTTVARVTATDKDEGVNSEITYSFHRAG 230 240 250 260 270 280 310 320 330 340 350 360 aj0033 QIFSLNSKSGEITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTF :.:.:::.:::::::. ::::::::::.:::.::::::::::::::::::::::.::.: gi|149 QVFGLNSNSGEITTQRTLDFEETKEYSIVVEARDGGGLVAQCTVEINIQDENDNKPEITV 290 300 310 320 330 340 370 380 390 400 410 420 aj0033 HSLLEMILENAVPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGT ::::: : ::: :::::.::::::.::::::::::.:..:.::::::::::::::::: : gi|149 HSLLETIPENAPPGTLISLIKIHDRDSGENGEVNCRLDSEAPFKIISSSKNSYKLVTDRT 350 360 370 380 390 400 430 440 450 460 470 480 aj0033 LDREQTPEYNVTITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGA :::: ::::::.: ::: :::::::: .: ::. :::::::.:::::::: . ::::::: gi|149 LDRELTPEYNVSIMATDGGKPPLSSSTKVTLHVGDVNDNAPLFHQASYLVYIAENNPPGA 410 420 430 440 450 460 490 500 510 520 530 540 aj0033 SIAQVCASDLDLGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFE ::::: ::: ::: ::.:::::.:::::: .: :::...:::::::::::::.::::.:. gi|149 SIAQVSASDPDLGSNGHVSYSIIASDLEPKSLWSYVTVNAQSGVVFAQRAFDHEQLRSFQ 470 480 490 500 510 520 550 560 570 580 590 600 aj0033 LTLQARDQGSPALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVT ::::::::::::::::::.::::::::::::::::::: ::::::::::::::::::::: gi|149 LTLQARDQGSPALSANVSMRVLVGDRNDNAPRVLYPALEPDGSALFDMVPRAAEPGYLVT 530 540 550 560 570 580 610 620 630 640 650 660 aj0033 KVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDG :::::::::::::::::::::::.::::::::::::::::::::..:::::::::.:::: gi|149 KVVAVDADSGHNAWLSYHVLQASDPGLFSLGLRTGEVRTARALGEKDAARQRLLVGVRDG 590 600 610 620 630 640 670 680 690 700 710 720 aj0033 GQPPLSATATLHLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVIL ::::::::::: :::::::::.:::..:: .: ::::::::::::::::::::::::::: gi|149 GQPPLSATATLLLVFADSLQEALPDLSDRSLPPDPQAELQFYLVVALALISVLFLLAVIL 650 660 670 680 690 700 730 740 750 760 770 780 aj0033 AVALRLRRSSSPAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFLKC :.:::::.::::.::.:::::.: .: ::: ::::.::::::::: ::.:::: ::::: gi|149 AIALRLRHSSSPSAWNCFQPGFCSESKPVVFPNYSEGTLPYSYNLYGAHAGKTECNFLKC 710 720 730 740 750 760 790 800 810 820 830 aj0033 SEQLSSGQDILCGDSSGALFPLCNSSESTSHPEL-QAPPNTDWRFSQAQRPGTSGSQNGD :: ::::: .:: .:::::::::.::: ::::: ::::::::::::::::::::::::: gi|149 SEPLSSGQGLLCPESSGALFPLCDSSEPTSHPEPPQAPPNTDWRFSQAQRPGTSGSQNGD 770 780 790 800 810 820 840 850 860 870 880 890 aj0033 DTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQ .:::::::::::::::::::::::::::::::::::.::::::::::::::::::::::: gi|149 ETGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGTGTMGLSARYGPQFTLQHVPDYRQ 830 840 850 860 870 880 900 910 920 930 aj0033 NVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK ::::::::::::::::::::::::::::::::::::::: gi|149 NVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 890 900 910 920 >>gi|127138610|ref|NP_001076030.1| protocadherin gamma s (923 aa) initn: 2800 init1: 2800 opt: 5176 Z-score: 5871.9 bits: 1097.8 E(): 0 Smith-Waterman score: 5176; 85.081% identity (94.378% similar) in 925 aa overlap (16-938:1-923) 10 20 30 40 50 60 aj0033 PGVSRLVSKLRRARGMGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGS ::::::::::::::::::::::::::::::::::::::::::::: gi|127 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGS 10 20 30 40 70 80 90 100 110 120 aj0033 VVGNLATDLGFSVQELPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|127 VVGNLATDLGFSVQELPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALE 50 60 70 80 90 100 130 140 150 160 170 180 aj0033 FEAVAENPLNFYHVNVEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLN ::::::::::::::::::::::::::::::::::::::::::::::::: :.::::: : gi|127 FEAVAENPLNFYHVNVEIEDINDHTPKFTQNSFELQISESAQPGTRFILGSAHDADIGSN 110 120 130 140 150 160 190 200 210 220 230 240 aj0033 SLQKYKLSLNPSFSLIIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGT .::.:.:: . :::: :::.:::::::..:. ::::.:. ..:.::::: : ::::.: gi|127 TLQNYQLSPSDHFSLINKEKSDGSKYPEMVLKTPLDREKQKSYHLTLTALDFGAPPLSST 170 180 190 200 210 220 250 260 270 280 290 300 aj0033 TELRIQVTDANDNPPVFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTG ..... ::::::: :::..:.::::: ::: ::::::::.:::::::.:.:::.:: ... gi|127 AQIHVLVTDANDNAPVFSQDIYRVSLSENVYPGTTVLQVTATDQDEGVNAEITFSFSEAS 230 240 250 260 270 280 310 320 330 340 350 aj0033 QI--FSLNSKSGEITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEV :: :.:::..::::. . :::::.::::.:.:.:::::..::::::... :::::.::: gi|127 QITQFDLNSNTGEITVLNTLDFEEVKEYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEV 290 300 310 320 330 340 360 370 380 390 400 410 aj0033 TFHSLLEMILENAVPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTD :.:: ..:.:.: :: :::.:..:.:: .::::.:.:.:.:::::..::.:.:::::: gi|127 IFQSLPNLIMEDAELGTHIALLKVRDKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTD 350 360 370 380 390 400 420 430 440 450 460 470 aj0033 GTLDREQTPEYNVTITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPP ..:::::.::::.:.:: :::::::::: :. ::: ::::::::: :.::.: : ::::: gi|127 AVLDREQNPEYNITVTARDRGKPPLSSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPP 410 420 430 440 450 460 480 490 500 510 520 530 aj0033 GASIAQVCASDLDLGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRT ::::.:: ::: ::: :::::: :.::::: :.::::.::.:::::::::::.::::. gi|127 GASISQVSASDPDLGPNGQVSYCIIASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRA 470 480 490 500 510 520 540 550 560 570 580 590 aj0033 FELTLQARDQGSPALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYL ::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::: gi|127 FELTLQARDQGSPALSANVSLRVLVDDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYL 530 540 550 560 570 580 600 610 620 630 640 650 aj0033 VTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVR ::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::: gi|127 VTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVR 590 600 610 620 630 640 660 670 680 690 700 710 aj0033 DGGQPPLSATATLHLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAV :::::::::::::::::::::::::::::::: ::: .:::::::::::::::::::.:. gi|127 DGGQPPLSATATLHLVFADSLQEVLPDITDRPDPSDLEAELQFYLVVALALISVLFLVAM 650 660 670 680 690 700 720 730 740 750 760 770 aj0033 ILAVALRLRRSSSPAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFL :::.:::::::::::.::::::: :::: :::::::.:::::::::::::::::::::: gi|127 ILAIALRLRRSSSPASWSCFQPGRCVKSESVVPPNYSEGTLPYSYNLCVAHTGKTEFNFL 710 720 730 740 750 760 780 790 800 810 820 830 aj0033 KCSEQLSSGQDILCGDSSGALFPLCNSSESTSHPELQAPPNTDWRFSQAQRPGTSGSQNG ::.:::::::::::::::::::::::::: ::: :::::::::::::::::::::::: gi|127 KCNEQLSSGQDILCGDSSGALFPLCNSSELTSHQ--QAPPNTDWRFSQAQRPGTSGSQNG 770 780 790 800 810 820 840 850 860 870 880 890 aj0033 DDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|127 DDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYR 830 840 850 860 870 880 900 910 920 930 aj0033 QNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK :::::::::::::::::::::::::::::::::::::::: gi|127 QNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 890 900 910 920 >>gi|148678177|gb|EDL10124.1| mCG133388, isoform CRA_g [ (926 aa) initn: 4351 init1: 4351 opt: 5163 Z-score: 5857.1 bits: 1095.1 E(): 0 Smith-Waterman score: 5163; 84.665% identity (93.737% similar) in 926 aa overlap (16-938:1-926) 10 20 30 40 50 60 aj0033 PGVSRLVSKLRRARGMGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGS : :..: ::..: :.:. ::: :::::: :::::.:::::: :: gi|148 MWEGTAERGRGQRRPMLLPFLLPLFCPALSEQIRYKIPEEMPTGS 10 20 30 40 70 80 90 100 110 120 aj0033 VVGNLATDLGFSVQELPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALE :::::: :::::::::::::::.::.::::.::.::::::::::::::.::::: :::: gi|148 VVGNLAKDLGFSVQELPTRKLRISSKKPYFSVSSESGELLVSSRLDREQICGKKLMCALE 50 60 70 80 90 100 130 140 150 160 170 180 aj0033 FEAVAENPLNFYHVNVEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLN :::::::::::::..::.::::::::::...: :::::::::::::::::::::::..:: gi|148 FEAVAENPLNFYHLSVELEDINDHTPKFAHTSTELQISESAQPGTRFILEVAEDADVALN 110 120 130 140 150 160 190 200 210 220 230 240 aj0033 SLQKYKLSLNPSFSLIIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGT :::.:::: .: ::.. :::::: :::::.::::::::::.:.:::::::::: :::::: gi|148 SLQNYKLSPSPVFSMVNKEKQDGRKYPELVLEKTLDREQQNYYRLVLTALDGGDPPLSGT 170 180 190 200 210 220 250 260 270 280 290 300 aj0033 TELRIQVTDANDNPPVFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTG ::::::::::::::::::..::.: : ::::::::::.:.:::.:::.::::.::..:.: gi|148 TELRIQVTDANDNPPVFNQEVYKVRLPENVPPGTTVLRVTATDKDEGVNSEISYSLHRAG 230 240 250 260 270 280 310 320 330 340 350 360 aj0033 QIFSLNSKSGEITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTF :.:.::::::::::: ::::: ::::.:::.:::::::::::::::::::::: ::.: gi|148 QVFGLNSKSGEITTQTTLDFEEIKEYSLVVEARDGGGLVAQCTVEINIQDENDNRPEITV 290 300 310 320 330 340 370 380 390 400 410 420 aj0033 HSLLEMILENAVPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGT :::: ::::: ::::::::::: ::::::::::.:.:::::::::::::::::::: . gi|148 DSLLETILENAETGTLIALIKIHDGDSGENGEVNCRLDGEVPFKIISSSKNSYKLVTDRA 350 360 370 380 390 400 430 440 450 460 470 480 aj0033 LDREQTPEYNVTITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGA :::: ::::::::::::::::::::: .: ::. :::::::.:::::::: . ::::::: gi|148 LDRELTPEYNVTITATDRGKPPLSSSTKVTLHVGDVNDNAPLFHQASYLVYIAENNPPGA 410 420 430 440 450 460 490 500 510 520 530 540 aj0033 SIAQVCASDLDLGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFE ::::: ::::::: ::.:::::.:::::: .: :::...:::::::::::::.::::.:. gi|148 SIAQVSASDLDLGSNGHVSYSIIASDLEPKSLWSYVTVNAQSGVVFAQRAFDHEQLRSFQ 470 480 490 500 510 520 550 560 570 580 590 600 aj0033 LTLQARDQGSPALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVT :::::::::::.::::::.:::::::::::::::::.: ::::::::::::::::::::: gi|148 LTLQARDQGSPSLSANVSMRVLVGDRNDNAPRVLYPTLEPDGSALFDMVPRAAEPGYLVT 530 540 550 560 570 580 610 620 630 640 650 660 aj0033 KVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDG :::::::::::::::::::::::.::::::::::::::::::::..:::::::::.:::: gi|148 KVVAVDADSGHNAWLSYHVLQASDPGLFSLGLRTGEVRTARALGEKDAARQRLLVGVRDG 590 600 610 620 630 640 670 680 690 700 710 720 aj0033 GQPPLSATATLHLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVIL ::::::::::: :::::::::.:::..:: .: ::::::::::::::::.:::::::::: gi|148 GQPPLSATATLLLVFADSLQEALPDLSDRSLPPDPQAELQFYLVVALALVSVLFLLAVIL 650 660 670 680 690 700 730 740 750 760 770 780 aj0033 AVALRLRRSSSPAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFLKC :.:::::.::::..:.:::::.: .: ::: ::::.::::::::: ::.:::: ::::: gi|148 AIALRLRHSSSPSVWNCFQPGFCSESKPVVFPNYSEGTLPYSYNLYGAHAGKTECNFLKC 710 720 730 740 750 760 790 800 810 820 830 aj0033 SEQLSSGQDILCGDSSGALFPLCNSSESTSHPEL---QAPPNTDWRFSQAQRPGTSGSQN :: ::::: .:: .:::::::::.::: ::::: ::::::::::::::::::::::: gi|148 SEPLSSGQGLLCPESSGALFPLCDSSEPTSHPEPLTPQAPPNTDWRFSQAQRPGTSGSQN 770 780 790 800 810 820 840 850 860 870 880 890 aj0033 GDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDY ::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 GDETGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDY 830 840 850 860 870 880 900 910 920 930 aj0033 RQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK ::::::::::::::::::::::::::::::::::::::::: gi|148 RQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 890 900 910 920 >>gi|114602373|ref|XP_001149798.1| PREDICTED: protocadhe (818 aa) initn: 5158 init1: 5158 opt: 5158 Z-score: 5852.2 bits: 1094.0 E(): 0 Smith-Waterman score: 5158; 99.124% identity (99.750% similar) in 799 aa overlap (16-814:1-799) 10 20 30 40 50 60 aj0033 PGVSRLVSKLRRARGMGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGS :: :.:::::::::::::::::::::::::::::::::::::::: gi|114 MGRGTGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGS 10 20 30 40 70 80 90 100 110 120 aj0033 VVGNLATDLGFSVQELPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 VVGNLATDLGFSVQELPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALE 50 60 70 80 90 100 130 140 150 160 170 180 aj0033 FEAVAENPLNFYHVNVEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 FEAVAENPLNFYHVNVEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLN 110 120 130 140 150 160 190 200 210 220 230 240 aj0033 SLQKYKLSLNPSFSLIIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGT :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: gi|114 SLQKYKLSLNPSFSLIIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGNPPLSGT 170 180 190 200 210 220 250 260 270 280 290 300 aj0033 TELRIQVTDANDNPPVFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 TELRIQVTDANDNPPVFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTG 230 240 250 260 270 280 310 320 330 340 350 360 aj0033 QIFSLNSKSGEITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 QIFSLNSKSGEITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTF 290 300 310 320 330 340 370 380 390 400 410 420 aj0033 HSLLEMILENAVPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 HSLLEMILENAVPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGT 350 360 370 380 390 400 430 440 450 460 470 480 aj0033 LDREQTPEYNVTITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LDREQTPEYNVTITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGA 410 420 430 440 450 460 490 500 510 520 530 540 aj0033 SIAQVCASDLDLGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 SIAQVCASDLDLGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFE 470 480 490 500 510 520 550 560 570 580 590 600 aj0033 LTLQARDQGSPALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LTLQARDQGSPALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVT 530 540 550 560 570 580 610 620 630 640 650 660 aj0033 KVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDG ::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::: gi|114 KVVAVDADSGHNAWLSYHVLHASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDG 590 600 610 620 630 640 670 680 690 700 710 720 aj0033 GQPPLSATATLHLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 GQPPLSATATLHLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVIL 650 660 670 680 690 700 730 740 750 760 770 780 aj0033 AVALRLRRSSSPAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFLKC :.:::::::::::::::::::::::::::::::::.:::::::::::::::::::::::: gi|114 AIALRLRRSSSPAAWSCFQPGLCVKSGPVVPPNYSEGTLPYSYNLCVAHTGKTEFNFLKC 710 720 730 740 750 760 790 800 810 820 830 840 aj0033 SEQLSSGQDILCGDSSGALFPLCNSSESTSHPELQAPPNTDWRFSQAQRPGTSGSQNGDD :::::: ::::::::::::::::::::::::::: gi|114 SEQLSSEQDILCGDSSGALFPLCNSSESTSHPELVSFIYVYSFSLPTQFSVFT 770 780 790 800 810 850 860 870 880 890 900 aj0033 TGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQN >>gi|13876352|gb|AAK26096.1| protocadherin gamma B5 [Mus (926 aa) initn: 4343 init1: 4343 opt: 5155 Z-score: 5848.0 bits: 1093.4 E(): 0 Smith-Waterman score: 5155; 84.773% identity (93.844% similar) in 926 aa overlap (16-938:1-926) 10 20 30 40 50 60 aj0033 PGVSRLVSKLRRARGMGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGS : :..: ::..: :.:. ::: :::::: :::::.:::::: :: gi|138 MWEGTAERGRGQRRPMLLPFLLPLFCPALSEQIRYKIPEEMPTGS 10 20 30 40 70 80 90 100 110 120 aj0033 VVGNLATDLGFSVQELPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALE :::::: :::::::::::::::.:::::::.::.::::::::::::::.::::: .:::: gi|138 VVGNLAKDLGFSVQELPTRKLRISSEKPYFSVSSESGELLVSSRLDREQICGKKLVCALE 50 60 70 80 90 100 130 140 150 160 170 180 aj0033 FEAVAENPLNFYHVNVEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLN ::::::::::::::.::.::::::::.::.. ::::::::::::::::::::::::.:: gi|138 FEAVAENPLNFYHVSVELEDINDHTPNFTHTFSELQISESAQPGTRFILEVAEDADIALN 110 120 130 140 150 160 190 200 210 220 230 240 aj0033 SLQKYKLSLNPSFSLIIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGT :::.:::: .:.:::. :::::: :::::.::::::::::.:.:::::::::: :::::: gi|138 SLQNYKLSPSPGFSLVNKEKQDGRKYPELVLEKTLDREQQNYYRLVLTALDGGDPPLSGT 170 180 190 200 210 220 250 260 270 280 290 300 aj0033 TELRIQVTDANDNPPVFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTG ::::::::::::::::::..::.: : ::::::::::.:.:::.:::.::::.:::.:.: gi|138 TELRIQVTDANDNPPVFNQEVYKVRLPENVPPGTTVLRVTATDKDEGVNSEISYSFHRAG 230 240 250 260 270 280 310 320 330 340 350 360 aj0033 QIFSLNSKSGEITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTF :.:.:::::::: ::: ::::: ::::.:::.:::::::::::::::::::::: ::.: gi|138 QVFGLNSKSGEIITQKTLDFEEIKEYSIVVEARDGGGLVAQCTVEINIQDENDNRPEITV 290 300 310 320 330 340 370 380 390 400 410 420 aj0033 HSLLEMILENAVPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGT .:::::: ::: :::::::::::: ::::::::::.:. ::::::::::::::::::: . gi|138 RSLLEMIPENAPPGTLIALIKIHDGDSGENGEVNCRLDDEVPFKIISSSKNSYKLVTDRA 350 360 370 380 390 400 430 440 450 460 470 480 aj0033 LDREQTPEYNVTITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGA :::: ::::::::::::::::::::: .: ::. :::::::.:::::::: . ::::::: gi|138 LDRELTPEYNVTITATDRGKPPLSSSTKVTLHVGDVNDNAPLFHQASYLVYIAENNPPGA 410 420 430 440 450 460 490 500 510 520 530 540 aj0033 SIAQVCASDLDLGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFE ::::: ::: ::: ::.:::::.:::::: .: :::...:::::::::::::.::::.:. gi|138 SIAQVSASDPDLGSNGHVSYSIIASDLEPKSLWSYVTVNAQSGVVFAQRAFDHEQLRSFQ 470 480 490 500 510 520 550 560 570 580 590 600 aj0033 LTLQARDQGSPALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVT :::::::.:::.::::::.::::::::::::::::::: ::::::::::::::.:::::: gi|138 LTLQARDHGSPTLSANVSMRVLVGDRNDNAPRVLYPALEPDGSALFDMVPRAAQPGYLVT 530 540 550 560 570 580 610 620 630 640 650 660 aj0033 KVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDG :::::::::::::::::::::::.::::::::::::::::::::..:::::::::.:::: gi|138 KVVAVDADSGHNAWLSYHVLQASDPGLFSLGLRTGEVRTARALGEKDAARQRLLVGVRDG 590 600 610 620 630 640 670 680 690 700 710 720 aj0033 GQPPLSATATLHLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVIL ::::::::::: :::::::::.:::..:. .: ::::::::::::::::.:::::::::: gi|138 GQPPLSATATLLLVFADSLQEALPDLSDHSLPPDPQAELQFYLVVALALVSVLFLLAVIL 650 660 670 680 690 700 730 740 750 760 770 780 aj0033 AVALRLRRSSSPAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFLKC :.:::::.::::..:.:::::.: .: ::: ::::.::::::::: ::.:::: ::::: gi|138 AIALRLRHSSSPSVWNCFQPGFCSESKPVVFPNYSEGTLPYSYNLYGAHAGKTECNFLKC 710 720 730 740 750 760 790 800 810 820 830 aj0033 SEQLSSGQDILCGDSSGALFPLCNSSESTSHPEL---QAPPNTDWRFSQAQRPGTSGSQN :: ::::: .:: .:::::::::.::: ::::: ::::::::::::::::::::::: gi|138 SEPLSSGQGLLCPESSGALFPLCDSSEPTSHPEPLTPQAPPNTDWRFSQAQRPGTSGSQN 770 780 790 800 810 820 840 850 860 870 880 890 aj0033 GDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDY ::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|138 GDETGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDY 830 840 850 860 870 880 900 910 920 930 aj0033 RQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK ::::::::::::::::::::::::::::::::::::::::: gi|138 RQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 890 900 910 920 938 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Thu Aug 7 01:02:00 2008 done: Thu Aug 7 01:04:20 2008 Total Scan time: 1064.500 Total Display time: 0.530 Function used was FASTA [version 34.26.5 April 26, 2007]