hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-01042197/chunk_1/iprscan-20080807-01042197.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: aj00333 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00028.8.ls Cadherin domain 288.3 1.4e-83 5 PF00028.8.fs Cadherin domain 286.7 4.1e-83 6 PF08266.2.fs Cadherin-like 166.0 3.7e-48 2 PF08266.2.ls Cadherin-like 166.2 7.6e-47 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF08266.2.ls 1/1 46 127 .. 1 84 [] 166.2 7.6e-47 PF08266.2.fs 1/2 46 127 .. 1 84 [] 164.3 1.2e-47 PF00028.8.fs 2/6 153 248 .. 1 107 [] 51.6 3.4e-14 PF00028.8.ls 1/5 153 248 .. 1 107 [] 53.5 6.6e-13 PF00028.8.fs 3/6 262 349 .. 1 107 [] 84.9 1e-23 PF00028.8.ls 2/5 262 349 .. 1 107 [] 86.7 6.8e-23 PF00028.8.ls 3/5 363 454 .. 1 107 [] 44.9 2.6e-10 PF00028.8.fs 4/6 367 454 .. 5 107 .] 43.8 6.2e-12 PF00028.8.ls 4/5 468 564 .. 1 107 [] 79.3 1.1e-20 PF00028.8.fs 5/6 468 564 .. 1 107 [] 77.5 1.3e-21 PF00028.8.ls 5/5 586 676 .. 1 107 [] 24.0 0.00051 PF00028.8.fs 6/6 593 676 .. 9 107 .] 26.3 6.2e-07 Alignments of top-scoring domains: PF08266.2.ls: domain 1 of 1, from 46 to 127: score 166.2, E = 7.6e-47 *->gqirYSVpEEterGsfVGNlAKDLGLdvqeLaaRgaRivSggnkqyF +qirY +pEE+++Gs+VGNlA DLG++vqeL++R++R+ S +k+yF aj00333 46 EQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSS--EKPYF 90 qlnletGdLlvnERiDREeLCgqsepCvLhlevllEn<-* +++e+G+Llv+ R+DREe+Cg+++ C+L++e++ En aj00333 91 TVSAESGELLVSSRLDREEICGKKPACALEFEAVAEN 127 PF08266.2.fs: domain 1 of 2, from 46 to 127: score 164.3, E = 1.2e-47 *->gqirYSVpEEterGsfVGNlAKDLGLdvqeLaaRgaRivSggnkqyF +qirY +pEE+++Gs+VGNlA DLG++vqeL++R++R+ S +k+yF aj00333 46 EQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSS--EKPYF 90 qlnletGdLlvnERiDREeLCgqsepCvLhlevllEn<-* +++e+G+Llv+ R+DREe+Cg+++ C+L++e++ En aj00333 91 TVSAESGELLVSSRLDREEICGKKPACALEFEAVAEN 127 PF00028.8.fs: domain 2 of 6, from 153 to 248: score 51.6, E = 3.4e-14 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr ++ +++E a++Gt+ + A DaD g+N+ +Y+++ ++ + aj00333 153 FELQISESAQPGTRFILEVAEDAD--IGLNSLQKYKLSLNP-SFSLI 196 IdpdtGdnegi....isttkpLDREeifngeYeLtveAtDadpllasggg I + d g + +++ + k LDRE++ + ++L++ A D+ g aj00333 197 IKE-KQD--GSkypeLALEKTLDREQQ--SYHRLVLTALDG-------GH 234 pplsstatvtitVl<-* ppls+t++++i+V+ aj00333 235 PPLSGTTELRIQVT 248 PF00028.8.ls: domain 1 of 5, from 153 to 248: score 53.5, E = 6.6e-13 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr ++ +++E a++Gt+ + A DaD g+N+ +Y+++ ++ + aj00333 153 FELQISESAQPGTRFILEVAEDAD--IGLNSLQKYKLSLNP-SFSLI 196 IdpdtGdnegi....isttkpLDREeifngeYeLtveAtDadpllasggg I + d g + +++ + k LDRE++ + ++L++ A D+ g aj00333 197 IKE-KQD--GSkypeLALEKTLDREQQ--SYHRLVLTALDG-------GH 234 pplsstatvtitVl<-* ppls+t++++i+V+ aj00333 235 PPLSGTTELRIQVT 248 PF00028.8.fs: domain 3 of 6, from 262 to 349: score 84.9, E = 1e-23 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr y +s++En+p+Gt+vl+v AtD D +g N+ i+Ys+ +++ ++F+ aj00333 262 YRVSLRENVPPGTTVLQVSATDQD--EGINSEITYSFYRTG--QIFS 304 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls +++++G+ i+t+k LD Ee+ eY+ +ve +D++ +l aj00333 305 LNSKSGE----ITTQKKLDFEET--KEYSMVVEGRDGG---------GLV 339 statvtitVl<-* + +tv i+++ aj00333 340 AQCTVEINIQ 349 PF00028.8.ls: domain 2 of 5, from 262 to 349: score 86.7, E = 6.8e-23 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr y +s++En+p+Gt+vl+v AtD D +g N+ i+Ys+ +++ ++F+ aj00333 262 YRVSLRENVPPGTTVLQVSATDQD--EGINSEITYSFYRTG--QIFS 304 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls +++++G+ i+t+k LD Ee+ eY+ +ve +D++ +l aj00333 305 LNSKSGE----ITTQKKLDFEET--KEYSMVVEGRDGG---------GLV 339 statvtitVl<-* + +tv i+++ aj00333 340 AQCTVEINIQ 349 PF00028.8.ls: domain 3 of 5, from 363 to 454: score 44.9, E = 2.6e-10 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr + Ena++Gt ++ ++++D D +g Ng + + g p F+ aj00333 363 LLEMILENAVPGTLIALIKIHDQD--SGENGEVNCQLQGEVP---FK 404 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls I + + + t LDRE++ +eY++t+ AtD+ g ppls aj00333 405 IISSSKNSYK-LVTDGTLDREQT--PEYNVTITATDR-------GKPPLS 444 statvtitVl<-* s +v+ ++ aj00333 445 SSISVILHIR 454 PF00028.8.fs: domain 4 of 6, from 367 to 454: score 43.8, E = 6.2e-12 *->vpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFrIdpd + Ena++Gt ++ ++++D D +g Ng + + g p F+I + aj00333 367 ILENAVPGTLIALIKIHDQD--SGENGEVNCQLQGEVP---FKIISS 408 tGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggpplsstat + + t LDRE++ +eY++t+ AtD+ g pplss + aj00333 409 SKNSYK-LVTDGTLDREQT--PEYNVTITATDR-------GKPPLSSSIS 448 vtitVl<-* v+ ++ aj00333 449 VILHIR 454 PF00028.8.ls: domain 4 of 5, from 468 to 564: score 79.3, E = 1.1e-20 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp..... y +svpEn p+G ++++v A+D D lg+Ng+++Ysi + ++ aj00333 468 YLVSVPENNPPGASIAQVCASDLD--LGLNGQVSYSIMASDLeplal 512 ggwFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgg + ++ ++G+ ++ ++ D+E+ +++eLt+ A+D+ g aj00333 513 ASYVSMSAQSGV----VFAQRAFDYEQL--RTFELTLQARDQ-------G 549 gpplsstatvtitVl<-* +p+ls+ +++++ V aj00333 550 SPALSANVSLRVLVG 564 PF00028.8.fs: domain 5 of 6, from 468 to 564: score 77.5, E = 1.3e-21 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp..... y +svpEn p+G ++++v A+D D lg+Ng+++Ysi + ++ aj00333 468 YLVSVPENNPPGASIAQVCASDLD--LGLNGQVSYSIMASDLeplal 512 ggwFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgg + ++ ++G+ ++ ++ D+E+ +++eLt+ A+D+ g aj00333 513 ASYVSMSAQSGV----VFAQRAFDYEQL--RTFELTLQARDQ-------G 549 gpplsstatvtitVl<-* +p+ls+ +++++ V aj00333 550 SPALSANVSLRVLVG 564 PF00028.8.ls: domain 5 of 5, from 586 to 676: score 24.0, E = 0.00051 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr + + + +p G v+ v A+DaD +g N+ ++Y l+ +++g F+ aj00333 586 FDMVPRAAEP-GYLVTKVVAVDAD--SGHNAWLSYHVLQASEPGLFS 629 IdpdtGdnegiisttkpL.DREeifngeYeLtveAtDadpllasgggppl + +tG+ ++t++ L+DR + + +L v ++D+ g+ppl aj00333 630 LGLRTGE----VRTARALgDRDA---ARQRLLVAVRDG-------GQPPL 665 sstatvtitVl<-* s+tat++ aj00333 666 SATATLHLVFA 676 PF00028.8.fs: domain 6 of 6, from 593 to 676: score 26.3, E = 6.2e-07 *->apvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFrIdpdtGdn a +G v+ v A+DaD +g N+ ++Y l+ +++g F++ +tG+ aj00333 593 AEPGYLVTKVVAVDAD--SGHNAWLSYHVLQASEPGLFSLGLRTGE- 636 egiisttkpL.DREeifngeYeLtveAtDadpllasgggpplsstatvti ++t++ L+DR + + +L v ++D+ g+ppls+tat++ aj00333 637 ---VRTARALgDRDA---ARQRLLVAVRDG-------GQPPLSATATLHL 673 tVl<-* aj00333 674 VFA 676 //